| Definition | Yersinia pseudotuberculosis YPIII chromosome, complete genome. |
|---|---|
| Accession | NC_010465 |
| Length | 4,689,441 |
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The map label for this gene is rcsD [H]
Identifier: 170025066
GI number: 170025066
Start: 3128077
End: 3130770
Strand: Direct
Name: rcsD [H]
Synonym: YPK_2842
Alternate gene names: 170025066
Gene position: 3128077-3130770 (Clockwise)
Preceding gene: 170025065
Following gene: 170025067
Centisome position: 66.7
GC content: 41.8
Gene sequence:
>2694_bases ATGCAAAACAATTCGTCTACCCACTCAGCGGCTAACATTACACGTTACTTCTGGCTATTTATCGTACTTCTGCTCATGAC TGTTGGGCTATATGCCTATAACTATACCAATGCTTATCTGACTGAAAAGAAGCATGCTTTAACGAATATCGCTAACGGTT TGCAACAACGCATTGATGACTATCGATATCATACTTACCAAATATATGATTTAGTCAATAATCCGATCAAAGCAAGTGAG CCCCCTCCTGTGGTGCAGGAAACCCGCCTGCGCCCTGACGTTTACTATATTGAAAAGCCTCGCAGAAAGACTGACGCTAT CATTTTTGGTAACCACGAGCCTGCAACGCTGACCATGGCATTACAGATATCTGACTATCTTGATAACCTGTGGGGGCCGC AAAATGACACTTACTCGATGTACTATCTTAACGGGCAGGACAATAGCTTACTCCTGATTACGACTCAGGCACTAAAAGAG GTCACATCACGCTTTAAAGAGAGCTACCTTACTGCCTTTGCTGAATCGCGACGGGCGGAAATGCTACAGCAGGTCAATAC GTTGGATGAGCGGGAGAGCTTCTCGCCCTTACGCAAATTGCGCTTCCAAAATGCCTACTATTTCACGCTAAGAACCACCT TTAACCGTCCTGGCCATTTAGCCACCGTGATCGCCTTTGATTTACCGATCAATGATTTAATTCCACCGAACATGGCACGT TCGAACTTCCTGCTTCAACCAGATAAAGTGCCACTCAATGAGGGGGCTACCCCCGAAGATATTGCGGCAACCAGCGTGTC ACTGAACGGCTCATGGGTTGAGTTCTCCGCACCACTGGCAAATGTCACACTGAAAATTATTTATCGTGTACCGGTTAGTC ATTTGATTATCGACTTATTAATAAACAACTTTTGGTTAATCCTAGCCAATATTGTGTTATTAGCGCTAACCATTCTGGCC GCCTATTTTGTCCGCCACCAATATGGTCGTCCAAGTGCTGATGTGACCGGACAATTAGAAGCTCAGAGATTGTTGAGTCA GGAGATCATTACCAACCTACCGCAAGGCTTATTAATTTATGACTTCAGCAACAGCACTGTCATTGCCAGCAACAAGATAG CGGAAAATCTACTGCCTCACCTGAATCTACAAAAAATTGCCACTATGGCAGAGCAGCACCACGGTGTGATTCAAGGGACG GTTAATAACGAAGTTTATGAAATCCACATGTTCCGTAGCCAGATCTCACCAGAGACGTATCTTTTTCTACTTAATGATCA GGATAAGGAAGTCTTGGTGAATAAGAAATTGCAGCAAGCAAGGCGTGAGTACGATAAAAATCTACAAGCGCGGAAACTGA TGTTGCACAACCTGGGGATTGAACTTGGCCAACCGGTCCACCACCTGAGCCAACTTGTTCGTACATTACAGGACACTACC GATTTGCAACAACAGCATGACATTAAGACCAAGCTGGTTGAGCAATCAGCAACTATCCTTGAACTGATTGATAACATCAC GTTACTGACTAAGCTGGAAACACAAGATTGGCAAACAGAACAACAGGTCTTCTCTTTATCAACCTTAATCGATAACCTGC TACTGGATCTGCTCCCCTCGATTAATCGGAAAGGCTTAAATCTGTTTAATCATTTTCATGTCAGCCTTGACCAAATTTAT CTAGGTGATGAAAAGGTATTACGTAAAATACTTTCGTTGTTGCTGAATTATTCTATCGTTACCACAGCTTACGGAAAAAT TACCCTCAATGTAGATCATGAACCAGGACATCCGGAACAATTGGTTATTCAAATAATGGATACTGGCGCGGGTATTTCTG ATGAAGAGATAGGTAATCTTAATTATCCTTTCCTTAGCCAAGCATTGGCCGACAGATACAATCATGGTTCGGGGCTGACA TTTTTTTTATGTAACCAATTATGTAAAAAATTAAACGGCCAATTAGAGATTCGCAGTAAAGTAGATATAGGTACACGCTA TACTATCCGGTTAACAATAGCCGTTAAAAATGAACAACAAGACACGCAAGAAAAATTACTGGATGGTGTCACAGTACTAT TAGATATAACCTCAGAAGAAGTACGCTCGATCATTACAATATTGTTAAATTCATTTGGTGCTAACTGCATTCTCACCGAT GAACGCCTACCAGGGCGGGATTATGATGTTACAATAACGGATAATCCGCAACATTATGATAATTACACATTATTGCTCGC GGCGGATGAAACGGGGTTTCACCAGTTACAAAACAATTATATACGGGCAAATTACAATTTAAGCAGCGCGGTTATTGATT CAATATTATTATTAATCGAGCGGCGAATTTTATCTGAACAATCGCAACAAAAGGTTGAGTACATTACAGAAGATGATATA AACCTCTATGAGAGGCAACTAAAAACCAGTGACTATTATTCCTTATTTGTCGAGACAGTACCGGTAGATCTGAAGAAACT GTATACTGAACTTCAGCAAAGTGATTTAACATCACTTTCGCAAACCGTACATCGATTAAAAGGCGTATTTGCCATGCTGA ACCTGGTTCTCGGCAAGCAGCTATGTGAAACATTAGAACAGCATATCGCAGATGGCGATCGGTTGAAGATCGAAAATAGC ATCAGTCAGATTGATTTTTTCATCACCAGACTGTTGCAGGAAGGTAACCCATAA
Upstream 100 bases:
>100_bases GTCTATCGGTTGCTTTTGGCTGTGTAGCACTTCTGTTATTAACCGTTGCTGCCAGCGCCAGAGCCGTCACGCGCTAACCA AGGGAATCGGCATTATCGTT
Downstream 100 bases:
>100_bases CCATGAACAACCTTAATGTAATTATTGCTGATGACCATCCAATTGTTTTGTTTGGCATCCGAAAGTCGCTTGAGCAAATT GAATGGGTAAACGTTGTCGG
Product: phosphotransfer intermediate protein in two-component regulatory system with RcsBC
Products: NA
Alternate protein names: Phosphotransfer intermediate RcsD [H]
Number of amino acids: Translated: 897; Mature: 897
Protein sequence:
>897_residues MQNNSSTHSAANITRYFWLFIVLLLMTVGLYAYNYTNAYLTEKKHALTNIANGLQQRIDDYRYHTYQIYDLVNNPIKASE PPPVVQETRLRPDVYYIEKPRRKTDAIIFGNHEPATLTMALQISDYLDNLWGPQNDTYSMYYLNGQDNSLLLITTQALKE VTSRFKESYLTAFAESRRAEMLQQVNTLDERESFSPLRKLRFQNAYYFTLRTTFNRPGHLATVIAFDLPINDLIPPNMAR SNFLLQPDKVPLNEGATPEDIAATSVSLNGSWVEFSAPLANVTLKIIYRVPVSHLIIDLLINNFWLILANIVLLALTILA AYFVRHQYGRPSADVTGQLEAQRLLSQEIITNLPQGLLIYDFSNSTVIASNKIAENLLPHLNLQKIATMAEQHHGVIQGT VNNEVYEIHMFRSQISPETYLFLLNDQDKEVLVNKKLQQARREYDKNLQARKLMLHNLGIELGQPVHHLSQLVRTLQDTT DLQQQHDIKTKLVEQSATILELIDNITLLTKLETQDWQTEQQVFSLSTLIDNLLLDLLPSINRKGLNLFNHFHVSLDQIY LGDEKVLRKILSLLLNYSIVTTAYGKITLNVDHEPGHPEQLVIQIMDTGAGISDEEIGNLNYPFLSQALADRYNHGSGLT FFLCNQLCKKLNGQLEIRSKVDIGTRYTIRLTIAVKNEQQDTQEKLLDGVTVLLDITSEEVRSIITILLNSFGANCILTD ERLPGRDYDVTITDNPQHYDNYTLLLAADETGFHQLQNNYIRANYNLSSAVIDSILLLIERRILSEQSQQKVEYITEDDI NLYERQLKTSDYYSLFVETVPVDLKKLYTELQQSDLTSLSQTVHRLKGVFAMLNLVLGKQLCETLEQHIADGDRLKIENS ISQIDFFITRLLQEGNP
Sequences:
>Translated_897_residues MQNNSSTHSAANITRYFWLFIVLLLMTVGLYAYNYTNAYLTEKKHALTNIANGLQQRIDDYRYHTYQIYDLVNNPIKASE PPPVVQETRLRPDVYYIEKPRRKTDAIIFGNHEPATLTMALQISDYLDNLWGPQNDTYSMYYLNGQDNSLLLITTQALKE VTSRFKESYLTAFAESRRAEMLQQVNTLDERESFSPLRKLRFQNAYYFTLRTTFNRPGHLATVIAFDLPINDLIPPNMAR SNFLLQPDKVPLNEGATPEDIAATSVSLNGSWVEFSAPLANVTLKIIYRVPVSHLIIDLLINNFWLILANIVLLALTILA AYFVRHQYGRPSADVTGQLEAQRLLSQEIITNLPQGLLIYDFSNSTVIASNKIAENLLPHLNLQKIATMAEQHHGVIQGT VNNEVYEIHMFRSQISPETYLFLLNDQDKEVLVNKKLQQARREYDKNLQARKLMLHNLGIELGQPVHHLSQLVRTLQDTT DLQQQHDIKTKLVEQSATILELIDNITLLTKLETQDWQTEQQVFSLSTLIDNLLLDLLPSINRKGLNLFNHFHVSLDQIY LGDEKVLRKILSLLLNYSIVTTAYGKITLNVDHEPGHPEQLVIQIMDTGAGISDEEIGNLNYPFLSQALADRYNHGSGLT FFLCNQLCKKLNGQLEIRSKVDIGTRYTIRLTIAVKNEQQDTQEKLLDGVTVLLDITSEEVRSIITILLNSFGANCILTD ERLPGRDYDVTITDNPQHYDNYTLLLAADETGFHQLQNNYIRANYNLSSAVIDSILLLIERRILSEQSQQKVEYITEDDI NLYERQLKTSDYYSLFVETVPVDLKKLYTELQQSDLTSLSQTVHRLKGVFAMLNLVLGKQLCETLEQHIADGDRLKIENS ISQIDFFITRLLQEGNP >Mature_897_residues MQNNSSTHSAANITRYFWLFIVLLLMTVGLYAYNYTNAYLTEKKHALTNIANGLQQRIDDYRYHTYQIYDLVNNPIKASE PPPVVQETRLRPDVYYIEKPRRKTDAIIFGNHEPATLTMALQISDYLDNLWGPQNDTYSMYYLNGQDNSLLLITTQALKE VTSRFKESYLTAFAESRRAEMLQQVNTLDERESFSPLRKLRFQNAYYFTLRTTFNRPGHLATVIAFDLPINDLIPPNMAR SNFLLQPDKVPLNEGATPEDIAATSVSLNGSWVEFSAPLANVTLKIIYRVPVSHLIIDLLINNFWLILANIVLLALTILA AYFVRHQYGRPSADVTGQLEAQRLLSQEIITNLPQGLLIYDFSNSTVIASNKIAENLLPHLNLQKIATMAEQHHGVIQGT VNNEVYEIHMFRSQISPETYLFLLNDQDKEVLVNKKLQQARREYDKNLQARKLMLHNLGIELGQPVHHLSQLVRTLQDTT DLQQQHDIKTKLVEQSATILELIDNITLLTKLETQDWQTEQQVFSLSTLIDNLLLDLLPSINRKGLNLFNHFHVSLDQIY LGDEKVLRKILSLLLNYSIVTTAYGKITLNVDHEPGHPEQLVIQIMDTGAGISDEEIGNLNYPFLSQALADRYNHGSGLT FFLCNQLCKKLNGQLEIRSKVDIGTRYTIRLTIAVKNEQQDTQEKLLDGVTVLLDITSEEVRSIITILLNSFGANCILTD ERLPGRDYDVTITDNPQHYDNYTLLLAADETGFHQLQNNYIRANYNLSSAVIDSILLLIERRILSEQSQQKVEYITEDDI NLYERQLKTSDYYSLFVETVPVDLKKLYTELQQSDLTSLSQTVHRLKGVFAMLNLVLGKQLCETLEQHIADGDRLKIENS ISQIDFFITRLLQEGNP
Specific function: May serves as a phosphotransfer intermediate between RcsC and RcsB. It may acquire a phosphoryl group at His-842 from RcsC 'Asp-866' and transmit it to 'Asp-56' of RcsB [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HPt domain [H]
Homologues:
Organism=Escherichia coli, GI1788545, Length=893, Percent_Identity=46.0246360582307, Blast_Score=751, Evalue=0.0, Organism=Escherichia coli, GI145693157, Length=465, Percent_Identity=24.7311827956989, Blast_Score=115, Evalue=1e-26, Organism=Escherichia coli, GI1788713, Length=246, Percent_Identity=24.7967479674797, Blast_Score=73, Evalue=9e-14, Organism=Escherichia coli, GI87081816, Length=470, Percent_Identity=21.2765957446809, Blast_Score=72, Evalue=2e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR008207 - InterPro: IPR005467 [H]
Pfam domain/function: PF02518 HATPase_c; PF01627 Hpt [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 102599; Mature: 102599
Theoretical pI: Translated: 5.42; Mature: 5.42
Prosite motif: PS50894 HPT ; PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQNNSSTHSAANITRYFWLFIVLLLMTVGLYAYNYTNAYLTEKKHALTNIANGLQQRIDD CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH YRYHTYQIYDLVNNPIKASEPPPVVQETRLRPDVYYIEKPRRKTDAIIFGNHEPATLTMA HHHHHEEEEEHHCCCCCCCCCCCCHHHHCCCCCEEEEECCCCCCCEEEECCCCCCEEEEE LQISDYLDNLWGPQNDTYSMYYLNGQDNSLLLITTQALKEVTSRFKESYLTAFAESRRAE EEEHHHHHHHCCCCCCCEEEEEEECCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHH MLQQVNTLDERESFSPLRKLRFQNAYYFTLRTTFNRPGHLATVIAFDLPINDLIPPNMAR HHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEECCCCCCEEEEEEEECCHHCCCCCCCCC SNFLLQPDKVPLNEGATPEDIAATSVSLNGSWVEFSAPLANVTLKIIYRVPVSHLIIDLL CCCEECCCCCCCCCCCCCCHHHEEEEECCCCEEEECCCHHHHEEEHEECCCHHHHHHHHH INNFWLILANIVLLALTILAAYFVRHQYGRPSADVTGQLEAQRLLSQEIITNLPQGLLIY HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEE DFSNSTVIASNKIAENLLPHLNLQKIATMAEQHHGVIQGTVNNEVYEIHMFRSQISPETY EECCCEEEECHHHHHHHCCCCCHHHHHHHHHHCCCEEEEECCCCEEEEEEHHHHCCCCEE LFLLNDQDKEVLVNKKLQQARREYDKNLQARKLMLHNLGIELGQPVHHLSQLVRTLQDTT EEEECCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH DLQQQHDIKTKLVEQSATILELIDNITLLTKLETQDWQTEQQVFSLSTLIDNLLLDLLPS HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHC INRKGLNLFNHFHVSLDQIYLGDEKVLRKILSLLLNYSIVTTAYGKITLNVDHEPGHPEQ CCCCCCHHHHHHEEEEEEEEECCHHHHHHHHHHHHCCHHEEEEEEEEEEEECCCCCCCHH LVIQIMDTGAGISDEEIGNLNYPFLSQALADRYNHGSGLTFFLCNQLCKKLNGQLEIRSK HHEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEEE VDIGTRYTIRLTIAVKNEQQDTQEKLLDGVTVLLDITSEEVRSIITILLNSFGANCILTD ECCCCEEEEEEEEEECCCCHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEC ERLPGRDYDVTITDNPQHYDNYTLLLAADETGFHQLQNNYIRANYNLSSAVIDSILLLIE CCCCCCCEEEEECCCCCCCCCEEEEEEECCCHHHHHCCCEEEECCCHHHHHHHHHHHHHH RRILSEQSQQKVEYITEDDINLYERQLKTSDYYSLFVETVPVDLKKLYTELQQSDLTSLS HHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH QTVHRLKGVFAMLNLVLGKQLCETLEQHIADGDRLKIENSISQIDFFITRLLQEGNP HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MQNNSSTHSAANITRYFWLFIVLLLMTVGLYAYNYTNAYLTEKKHALTNIANGLQQRIDD CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH YRYHTYQIYDLVNNPIKASEPPPVVQETRLRPDVYYIEKPRRKTDAIIFGNHEPATLTMA HHHHHEEEEEHHCCCCCCCCCCCCHHHHCCCCCEEEEECCCCCCCEEEECCCCCCEEEEE LQISDYLDNLWGPQNDTYSMYYLNGQDNSLLLITTQALKEVTSRFKESYLTAFAESRRAE EEEHHHHHHHCCCCCCCEEEEEEECCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHH MLQQVNTLDERESFSPLRKLRFQNAYYFTLRTTFNRPGHLATVIAFDLPINDLIPPNMAR HHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEECCCCCCEEEEEEEECCHHCCCCCCCCC SNFLLQPDKVPLNEGATPEDIAATSVSLNGSWVEFSAPLANVTLKIIYRVPVSHLIIDLL CCCEECCCCCCCCCCCCCCHHHEEEEECCCCEEEECCCHHHHEEEHEECCCHHHHHHHHH INNFWLILANIVLLALTILAAYFVRHQYGRPSADVTGQLEAQRLLSQEIITNLPQGLLIY HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEE DFSNSTVIASNKIAENLLPHLNLQKIATMAEQHHGVIQGTVNNEVYEIHMFRSQISPETY EECCCEEEECHHHHHHHCCCCCHHHHHHHHHHCCCEEEEECCCCEEEEEEHHHHCCCCEE LFLLNDQDKEVLVNKKLQQARREYDKNLQARKLMLHNLGIELGQPVHHLSQLVRTLQDTT EEEECCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH DLQQQHDIKTKLVEQSATILELIDNITLLTKLETQDWQTEQQVFSLSTLIDNLLLDLLPS HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHC INRKGLNLFNHFHVSLDQIYLGDEKVLRKILSLLLNYSIVTTAYGKITLNVDHEPGHPEQ CCCCCCHHHHHHEEEEEEEEECCHHHHHHHHHHHHCCHHEEEEEEEEEEEECCCCCCCHH LVIQIMDTGAGISDEEIGNLNYPFLSQALADRYNHGSGLTFFLCNQLCKKLNGQLEIRSK HHEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEEE VDIGTRYTIRLTIAVKNEQQDTQEKLLDGVTVLLDITSEEVRSIITILLNSFGANCILTD ECCCCEEEEEEEEEECCCCHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEC ERLPGRDYDVTITDNPQHYDNYTLLLAADETGFHQLQNNYIRANYNLSSAVIDSILLLIE CCCCCCCEEEEECCCCCCCCCEEEEEEECCCHHHHHCCCEEEECCCHHHHHHHHHHHHHH RRILSEQSQQKVEYITEDDINLYERQLKTSDYYSLFVETVPVDLKKLYTELQQSDLTSLS HHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH QTVHRLKGVFAMLNLVLGKQLCETLEQHIADGDRLKIENSISQIDFFITRLLQEGNP HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9097040; 9278503; 2404948; 7984428; 11758943; 11309126 [H]