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The map label for this gene is quuD [H]

Identifier: 170025051

GI number: 170025051

Start: 3113099

End: 3113578

Strand: Reverse

Name: quuD [H]

Synonym: YPK_2827

Alternate gene names: 170025051

Gene position: 3113578-3113099 (Counterclockwise)

Preceding gene: 170025056

Following gene: 170025050

Centisome position: 66.4

GC content: 46.67

Gene sequence:

>480_bases
ATGAGTTCATTAAACGGTCCGCAAGCCGGAAATCACAGTCAGAAGAGCCAGGGTATGAGAGACATCCAATTGGTATTAGC
GCGGTGGGGGGTATGGGCGAGGTATAGCTCGGGGCTGGATTATTCATCGATAGCCGCAGGTTTCAAAGGGTTGCTGGCCG
ATACCTCTAAAAGTAAGGCGTCATGTTGTGACGATGATGGCCTGGTGGTCGATGGCTGTGTTGCACGATTGAAACAATGT
CGGCCAAATGAATATGAATTGATTATTCGCCACTATGTCCTTAATCAGTCAAAACGGGCGATTGCACGGCAGCAAAAAAG
AGATGAAAAGCTGATTAGGATTAACATGCAGATGGCCGAAGGTTTCATCGATGGCTGTTTGGCGATGCTAAATGTGAAAT
TAACCATGGATCCTTTCATTGAGAATTTACCTATTTATGAACAGCCATCAGCACGGTCCGAAGAGAATGCCTCAGCCTGA

Upstream 100 bases:

>100_bases
ACCCGCAGACAGCAGCCAGATTAACCGGTGATTTTCGTTGTTGACCAATAAATAGGCAGAGGTGTCATCGCTGACCCCGC
CTTTTGTGGAGTAAGGGTAT

Downstream 100 bases:

>100_bases
TATTTTGGGGAGATGCGTGGCACACAAATATTCACAATTCTTTGTGAAGGACTATTTTAGTCTAAAATAAATAAAGTTAT
TTAATAACATTAAGTTAAAT

Product: antitermination Q family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 159; Mature: 158

Protein sequence:

>159_residues
MSSLNGPQAGNHSQKSQGMRDIQLVLARWGVWARYSSGLDYSSIAAGFKGLLADTSKSKASCCDDDGLVVDGCVARLKQC
RPNEYELIIRHYVLNQSKRAIARQQKRDEKLIRINMQMAEGFIDGCLAMLNVKLTMDPFIENLPIYEQPSARSEENASA

Sequences:

>Translated_159_residues
MSSLNGPQAGNHSQKSQGMRDIQLVLARWGVWARYSSGLDYSSIAAGFKGLLADTSKSKASCCDDDGLVVDGCVARLKQC
RPNEYELIIRHYVLNQSKRAIARQQKRDEKLIRINMQMAEGFIDGCLAMLNVKLTMDPFIENLPIYEQPSARSEENASA
>Mature_158_residues
SSLNGPQAGNHSQKSQGMRDIQLVLARWGVWARYSSGLDYSSIAAGFKGLLADTSKSKASCCDDDGLVVDGCVARLKQCR
PNEYELIIRHYVLNQSKRAIARQQKRDEKLIRINMQMAEGFIDGCLAMLNVKLTMDPFIENLPIYEQPSARSEENASA

Specific function: Positively regulate expression of some phage genes. Bacterial host RNA polymerase modified by antitermination proteins transcribes through termination sites that otherwise prevent expression of the regulated genes [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phage antitermination Q type 1 family [H]

Homologues:

Organism=Escherichia coli, GI1786763, Length=125, Percent_Identity=41.6, Blast_Score=106, Evalue=6e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010534 [H]

Pfam domain/function: PF06530 Phage_antitermQ [H]

EC number: NA

Molecular weight: Translated: 17685; Mature: 17554

Theoretical pI: Translated: 8.20; Mature: 8.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
6.9 %Cys+Met (Translated Protein)
3.2 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSLNGPQAGNHSQKSQGMRDIQLVLARWGVWARYSSGLDYSSIAAGFKGLLADTSKSKA
CCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCC
SCCDDDGLVVDGCVARLKQCRPNEYELIIRHYVLNQSKRAIARQQKRDEKLIRINMQMAE
CCCCCCCEEHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHCHHHHHHHHHHHH
GFIDGCLAMLNVKLTMDPFIENLPIYEQPSARSEENASA
HHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SSLNGPQAGNHSQKSQGMRDIQLVLARWGVWARYSSGLDYSSIAAGFKGLLADTSKSKA
CCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCC
SCCDDDGLVVDGCVARLKQCRPNEYELIIRHYVLNQSKRAIARQQKRDEKLIRINMQMAE
CCCCCCCEEHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHCHHHHHHHHHHHH
GFIDGCLAMLNVKLTMDPFIENLPIYEQPSARSEENASA
HHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8648624; 9278503 [H]