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The map label for this gene is rbsB [H]

Identifier: 170024993

GI number: 170024993

Start: 3054254

End: 3055342

Strand: Reverse

Name: rbsB [H]

Synonym: YPK_2768

Alternate gene names: 170024993

Gene position: 3055342-3054254 (Counterclockwise)

Preceding gene: 170024994

Following gene: 170024992

Centisome position: 65.15

GC content: 54.73

Gene sequence:

>1089_bases
ATGACAAAAGCAACGCAAGCGGGCGTGAGCCGACGCGGCCTGTTGGTTGGTGGTGCGGTACTGGGATTGGGCATGGTGAT
CGGGCGAGGAGCATTGGCACAAAACCGCCTTTCGATCCCTTACTCGAATAAAAGCCTCGATTACTACTTCTTTGTGATTC
AGGAAGCATCAGTGAAACGCGCGGTTCTGGCACGTTCGGGGGAGTTTCAGGCGACTAACGCCAATTTTGACAATACCCGC
CAACTCGAACAGTGGCAAAGCCTACTGTTGTCCCGCCCTTCAGCGATTATTTCGGACCCCATTGACAGCCAGGCCATTGT
TTCTGCTATTCGGCGCTACAACCGGGAGAAGATACCGGTCGGCATCATCGATACCCCCGCAGACGGTGGGGATGTGGCGA
TTACCGTCAGCTTCGATAATTTTCAAGGTGGCGTCATGGCGGCGGAAGAGATCGTTAACCGCCTGATCACCCGATATGGC
CGCCCGAAGGGAACGGTGCTGAATTGTTATGGCGCTCTGGCCTCAGTAGCCTGGCGCTTGCGTAAAGAGGGGATGGATTC
GGTTTTTGCCAAGTATCCGGGCATCACCTATTTGGCTCGTCCTACCGATGGTCAGCTCGAAAAAATGCTTTCGGTCACCT
TGTCCACGCTGTCGGAATACCCCGACCTTGATGCTGTTCATGCCCCTTCGGATTCCCCCTCTCGCGGTATCGTCACTGCG
CTGCAACAGAAAGGCCGCTGGAAGAAGATAGGAGAGGCGGGACACGTCATCTTCGTTAACATTGATGGAGAACCTATTGC
GCTGAAATGGATTCAGGACGGCTATATGGATGCTTGCATATCTCAGGATCCGGTGGCCTATGGCGAGATTGCTGTCGATA
TGATCGTCAAGCACGCGCTAAAAGGTGAAGCTGTCCCGCTGGGCACTTATCAAGACAAAAAATACTTCTGGGAGTCGGGC
GAGATTGTCCAAGGCAAGACCGGGCCGACGCTCATCATCCCCGCCTTCGTGATCAATCGTGACAATGTGCAGGATCCGCG
CCATTGGGCCTCGGTGGCGGAGAAGACATGGGGCATCCCCTATACCTGA

Upstream 100 bases:

>100_bases
AAAGAGCAAAAGAGCAAAAGAGCAAAAGAGCAAAAGAGCAAAAGAGCAAAAGAGCAAAAGAGAGTATCACAGCATGCAGA
CATAAAATTGGAGATAACCC

Downstream 100 bases:

>100_bases
TCATCGCAGCGGACCCCATCGTTTCGTAGGCCCAGATCAGCGTCGGAGAGGGGAAGGTTGCTCTGACATTTATCCGGCAA
GGTGAGGGTGAGCGAGCGAT

Product: ABC transporter periplasmic sugar-binding protein

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 362; Mature: 361

Protein sequence:

>362_residues
MTKATQAGVSRRGLLVGGAVLGLGMVIGRGALAQNRLSIPYSNKSLDYYFFVIQEASVKRAVLARSGEFQATNANFDNTR
QLEQWQSLLLSRPSAIISDPIDSQAIVSAIRRYNREKIPVGIIDTPADGGDVAITVSFDNFQGGVMAAEEIVNRLITRYG
RPKGTVLNCYGALASVAWRLRKEGMDSVFAKYPGITYLARPTDGQLEKMLSVTLSTLSEYPDLDAVHAPSDSPSRGIVTA
LQQKGRWKKIGEAGHVIFVNIDGEPIALKWIQDGYMDACISQDPVAYGEIAVDMIVKHALKGEAVPLGTYQDKKYFWESG
EIVQGKTGPTLIIPAFVINRDNVQDPRHWASVAEKTWGIPYT

Sequences:

>Translated_362_residues
MTKATQAGVSRRGLLVGGAVLGLGMVIGRGALAQNRLSIPYSNKSLDYYFFVIQEASVKRAVLARSGEFQATNANFDNTR
QLEQWQSLLLSRPSAIISDPIDSQAIVSAIRRYNREKIPVGIIDTPADGGDVAITVSFDNFQGGVMAAEEIVNRLITRYG
RPKGTVLNCYGALASVAWRLRKEGMDSVFAKYPGITYLARPTDGQLEKMLSVTLSTLSEYPDLDAVHAPSDSPSRGIVTA
LQQKGRWKKIGEAGHVIFVNIDGEPIALKWIQDGYMDACISQDPVAYGEIAVDMIVKHALKGEAVPLGTYQDKKYFWESG
EIVQGKTGPTLIIPAFVINRDNVQDPRHWASVAEKTWGIPYT
>Mature_361_residues
TKATQAGVSRRGLLVGGAVLGLGMVIGRGALAQNRLSIPYSNKSLDYYFFVIQEASVKRAVLARSGEFQATNANFDNTRQ
LEQWQSLLLSRPSAIISDPIDSQAIVSAIRRYNREKIPVGIIDTPADGGDVAITVSFDNFQGGVMAAEEIVNRLITRYGR
PKGTVLNCYGALASVAWRLRKEGMDSVFAKYPGITYLARPTDGQLEKMLSVTLSTLSEYPDLDAVHAPSDSPSRGIVTAL
QQKGRWKKIGEAGHVIFVNIDGEPIALKWIQDGYMDACISQDPVAYGEIAVDMIVKHALKGEAVPLGTYQDKKYFWESGE
IVQGKTGPTLIIPAFVINRDNVQDPRHWASVAEKTWGIPYT

Specific function: Involved in the high-affinity D-ribose membrane transport system and also serves as the primary chemoreceptor for chemotaxis [H]

COG id: COG1879

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790192, Length=285, Percent_Identity=26.3157894736842, Blast_Score=89, Evalue=5e-19,
Organism=Escherichia coli, GI1790526, Length=295, Percent_Identity=24.406779661017, Blast_Score=75, Evalue=8e-15,

Paralogues:

None

Copy number: 3940 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 5900 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). 1520 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001761 [H]

Pfam domain/function: PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 39609; Mature: 39478

Theoretical pI: Translated: 8.56; Mature: 8.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKATQAGVSRRGLLVGGAVLGLGMVIGRGALAQNRLSIPYSNKSLDYYFFVIQEASVKR
CCCCCCCCCCCCCEEEHHHHHHHHHHHCCCCCCCCCEECCCCCCCCEEEEEEEECCHHHH
AVLARSGEFQATNANFDNTRQLEQWQSLLLSRPSAIISDPIDSQAIVSAIRRYNREKIPV
HHHHCCCCCEECCCCCCCHHHHHHHHHHHHCCCCHHHCCCCCHHHHHHHHHHCCCCCCCE
GIIDTPADGGDVAITVSFDNFQGGVMAAEEIVNRLITRYGRPKGTVLNCYGALASVAWRL
EEEECCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHH
RKEGMDSVFAKYPGITYLARPTDGQLEKMLSVTLSTLSEYPDLDAVHAPSDSPSRGIVTA
HHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCHHHHH
LQQKGRWKKIGEAGHVIFVNIDGEPIALKWIQDGYMDACISQDPVAYGEIAVDMIVKHAL
HHHCCCHHHCCCCCCEEEEEECCCEEEEEEECCCHHHHHCCCCCCCHHHHHHHHHHHHHH
KGEAVPLGTYQDKKYFWESGEIVQGKTGPTLIIPAFVINRDNVQDPRHWASVAEKTWGIP
CCCCEECCCCCCCCEEECCCCEEECCCCCEEEEEEEEECCCCCCCHHHHHHHHHHCCCCC
YT
CC
>Mature Secondary Structure 
TKATQAGVSRRGLLVGGAVLGLGMVIGRGALAQNRLSIPYSNKSLDYYFFVIQEASVKR
CCCCCCCCCCCCEEEHHHHHHHHHHHCCCCCCCCCEECCCCCCCCEEEEEEEECCHHHH
AVLARSGEFQATNANFDNTRQLEQWQSLLLSRPSAIISDPIDSQAIVSAIRRYNREKIPV
HHHHCCCCCEECCCCCCCHHHHHHHHHHHHCCCCHHHCCCCCHHHHHHHHHHCCCCCCCE
GIIDTPADGGDVAITVSFDNFQGGVMAAEEIVNRLITRYGRPKGTVLNCYGALASVAWRL
EEEECCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHH
RKEGMDSVFAKYPGITYLARPTDGQLEKMLSVTLSTLSEYPDLDAVHAPSDSPSRGIVTA
HHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCHHHHH
LQQKGRWKKIGEAGHVIFVNIDGEPIALKWIQDGYMDACISQDPVAYGEIAVDMIVKHAL
HHHCCCHHHCCCCCCEEEEEECCCEEEEEEECCCHHHHHCCCCCCCHHHHHHHHHHHHHH
KGEAVPLGTYQDKKYFWESGEIVQGKTGPTLIIPAFVINRDNVQDPRHWASVAEKTWGIP
CCCCEECCCCCCCCEEECCCCEEECCCCCEEEEEEEEECCCCCCCHHHHHHHHHHCCCCC
YT
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 6313683; 7686882; 9278503; 3011793; 3011794; 8899705; 9298646; 1583688; 7982928; 9641984 [H]