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The map label for this gene is sxy [H]

Identifier: 170024853

GI number: 170024853

Start: 2884019

End: 2884654

Strand: Reverse

Name: sxy [H]

Synonym: YPK_2628

Alternate gene names: 170024853

Gene position: 2884654-2884019 (Counterclockwise)

Preceding gene: 170024857

Following gene: 170024850

Centisome position: 61.51

GC content: 43.87

Gene sequence:

>636_bases
ATGAAAATCATGTCAGAAAAAAGGATCGCTCAAGCACAAGTTCGTTTTGGTTTTCTGGGGCAGATAACAATTCGTTCCCA
ATTTGGGGGCTATGGTCTATTGGTTAATAGCATCATGTTCGCTGTTGTTTCGGAAGGTGAGCTTTATTTGCGTGCTAACG
ATAATATTGAGGATTTATTCCGCGCCAGTGGAATGGCTAACCTTGTTTATGCTAAACGCGGGTTACCTGTCTTGCTACGT
TATTATCGGGTTGATACTTCATTATGGAATGATGGACTCAGATTACATCATTTCGTCCGGCAGGCTTATGAGGGCGCGAA
AATAGACGTTCTGAGTAAGAAAGGCCCAGTGGTACGGCTGAAGGATTTACCTAATCTTAGCGCCAGCCTTGAACGGCTAT
TATGGAAAGTGGGTATAAAGAATGCGACTGAATTACGCCTTGAAGGCGCTAAATGTTGCTACTTGAAATTACGGGCGTTA
AGGCGCTCTCTTGGGATTAATATTTTGCTGGCGTTGGCGGGGGCTATCAGTGGCTATCATTATGCTGCTTTGCCTTTGAT
GATGCGCAGTGAGCTTATCGAATGGTTTGAAAAACACATCCATCCAGCAAAGGCTCCATTATATGAAACGGCATAA

Upstream 100 bases:

>100_bases
TACGTAATCCATATTGCGTATTTTTGCAATTAGTTGTTCCTCTTACACTTATTGCTACAAGACAGGGACATTGGTTAGGA
TTTTTACTAAAGGAGTAGTC

Downstream 100 bases:

>100_bases
TGGTGTGAGCCAGTGTAATGGGGTGAGTCAGCATAACTGTGTGAAACAGTATAACCGTATGAAACCGTATAATGGGCCAC
GATGGGTGGCCCTTGGGTAC

Product: regulator of competence-specific genes

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 211; Mature: 211

Protein sequence:

>211_residues
MKIMSEKRIAQAQVRFGFLGQITIRSQFGGYGLLVNSIMFAVVSEGELYLRANDNIEDLFRASGMANLVYAKRGLPVLLR
YYRVDTSLWNDGLRLHHFVRQAYEGAKIDVLSKKGPVVRLKDLPNLSASLERLLWKVGIKNATELRLEGAKCCYLKLRAL
RRSLGINILLALAGAISGYHYAALPLMMRSELIEWFEKHIHPAKAPLYETA

Sequences:

>Translated_211_residues
MKIMSEKRIAQAQVRFGFLGQITIRSQFGGYGLLVNSIMFAVVSEGELYLRANDNIEDLFRASGMANLVYAKRGLPVLLR
YYRVDTSLWNDGLRLHHFVRQAYEGAKIDVLSKKGPVVRLKDLPNLSASLERLLWKVGIKNATELRLEGAKCCYLKLRAL
RRSLGINILLALAGAISGYHYAALPLMMRSELIEWFEKHIHPAKAPLYETA
>Mature_211_residues
MKIMSEKRIAQAQVRFGFLGQITIRSQFGGYGLLVNSIMFAVVSEGELYLRANDNIEDLFRASGMANLVYAKRGLPVLLR
YYRVDTSLWNDGLRLHHFVRQAYEGAKIDVLSKKGPVVRLKDLPNLSASLERLLWKVGIKNATELRLEGAKCCYLKLRAL
RRSLGINILLALAGAISGYHYAALPLMMRSELIEWFEKHIHPAKAPLYETA

Specific function: Unknown

COG id: COG3070

COG function: function code K; Regulator of competence-specific genes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae DNA transformation protein tfoX [H]

Homologues:

Organism=Escherichia coli, GI1787193, Length=195, Percent_Identity=44.6153846153846, Blast_Score=144, Evalue=4e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007077
- InterPro:   IPR007076 [H]

Pfam domain/function: PF04994 TfoX_C; PF04993 TfoX_N [H]

EC number: NA

Molecular weight: Translated: 23865; Mature: 23865

Theoretical pI: Translated: 10.27; Mature: 10.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIMSEKRIAQAQVRFGFLGQITIRSQFGGYGLLVNSIMFAVVSEGELYLRANDNIEDLF
CCCCHHHHHHHHHHHHCEEEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCHHHHH
RASGMANLVYAKRGLPVLLRYYRVDTSLWNDGLRLHHFVRQAYEGAKIDVLSKKGPVVRL
HHCCCHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCEEEEECCCCCEEEE
KDLPNLSASLERLLWKVGIKNATELRLEGAKCCYLKLRALRRSLGINILLALAGAISGYH
CCCCCHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHCHHHHHHHHHHHCCCH
YAALPLMMRSELIEWFEKHIHPAKAPLYETA
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MKIMSEKRIAQAQVRFGFLGQITIRSQFGGYGLLVNSIMFAVVSEGELYLRANDNIEDLF
CCCCHHHHHHHHHHHHCEEEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCHHHHH
RASGMANLVYAKRGLPVLLRYYRVDTSLWNDGLRLHHFVRQAYEGAKIDVLSKKGPVVRL
HHCCCHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCEEEEECCCCCEEEE
KDLPNLSASLERLLWKVGIKNATELRLEGAKCCYLKLRALRRSLGINILLALAGAISGYH
CCCCCHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHCHHHHHHHHHHHCCCH
YAALPLMMRSELIEWFEKHIHPAKAPLYETA
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]