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The map label for this gene is pqrA [H]

Identifier: 170024709

GI number: 170024709

Start: 2716811

End: 2717197

Strand: Direct

Name: pqrA [H]

Synonym: YPK_2484

Alternate gene names: 170024709

Gene position: 2716811-2717197 (Clockwise)

Preceding gene: 170024706

Following gene: 170024712

Centisome position: 57.93

GC content: 41.86

Gene sequence:

>387_bases
ATGTCACAAGAAAATCATCTCGCGTTAGTCTGCGCCCTCAGTAAATGGGTCGAAACCCACCTAGGGCGGGTCATCTATCT
TGAAGAGTTAGCCGCATACTCAGGTTATTCGCTTTGGCATATGCAAAAAATATTTAAAGATGTCACTGGCGTGTCACTGG
GTAAGTACATACGGGAGAGGCGATTAGCAGGCGCTGTTTATCAGCTAAGGAGCAGTGATAGCACTATTTTCGATATCGCT
TTAGATTTTGGTTTTGGTTCACAATCACACTTTACGTATATGTTTAGAAAGCATTACGGCATCACTCCGTATGACTTCAG
ACAAAACACAGATATTGACCTTAATATTGCATTACCTTTACATGCTATTCACCAAAAACAGGCCTGA

Upstream 100 bases:

>100_bases
CCGCACATTGGGTATAATCCAGGAGAGTTCAGTGTTTTATGTTGTTCGATTCAACTTGTGTATACTGCAACACTCCCAAC
CAGAAAAAACAGACTAAATA

Downstream 100 bases:

>100_bases
TAACTTCTTGTTATCACTGTTCATCGGTAATACAGAAGGTGCCTATAATACATAAAATAGCTACCCGGTGAATAACACGC
TTCAGTCCTCTTTATAACAG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 128; Mature: 127

Protein sequence:

>128_residues
MSQENHLALVCALSKWVETHLGRVIYLEELAAYSGYSLWHMQKIFKDVTGVSLGKYIRERRLAGAVYQLRSSDSTIFDIA
LDFGFGSQSHFTYMFRKHYGITPYDFRQNTDIDLNIALPLHAIHQKQA

Sequences:

>Translated_128_residues
MSQENHLALVCALSKWVETHLGRVIYLEELAAYSGYSLWHMQKIFKDVTGVSLGKYIRERRLAGAVYQLRSSDSTIFDIA
LDFGFGSQSHFTYMFRKHYGITPYDFRQNTDIDLNIALPLHAIHQKQA
>Mature_127_residues
SQENHLALVCALSKWVETHLGRVIYLEELAAYSGYSLWHMQKIFKDVTGVSLGKYIRERRLAGAVYQLRSSDSTIFDIAL
DFGFGSQSHFTYMFRKHYGITPYDFRQNTDIDLNIALPLHAIHQKQA

Specific function: Regulatory factor of blood coagulation [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790497, Length=103, Percent_Identity=39.8058252427184, Blast_Score=96, Evalue=6e-22,
Organism=Escherichia coli, GI1790857, Length=107, Percent_Identity=41.1214953271028, Blast_Score=94, Evalue=4e-21,
Organism=Escherichia coli, GI87081928, Length=108, Percent_Identity=36.1111111111111, Blast_Score=84, Evalue=3e-18,
Organism=Escherichia coli, GI1790339, Length=108, Percent_Identity=30.5555555555556, Blast_Score=65, Evalue=2e-12,

Paralogues:

None

Copy number: 2500 (L-broth) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 14772; Mature: 14641

Theoretical pI: Translated: 8.45; Mature: 8.45

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQENHLALVCALSKWVETHLGRVIYLEELAAYSGYSLWHMQKIFKDVTGVSLGKYIRER
CCCCCCEEHHHHHHHHHHHHCCCEEHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHH
RLAGAVYQLRSSDSTIFDIALDFGFGSQSHFTYMFRKHYGITPYDFRQNTDIDLNIALPL
HHHHHHHHHCCCCCEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEEECCH
HAIHQKQA
HHHHCCCC
>Mature Secondary Structure 
SQENHLALVCALSKWVETHLGRVIYLEELAAYSGYSLWHMQKIFKDVTGVSLGKYIRER
CCCCCEEHHHHHHHHHHHHCCCEEHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHH
RLAGAVYQLRSSDSTIFDIALDFGFGSQSHFTYMFRKHYGITPYDFRQNTDIDLNIALPL
HHHHHHHHHCCCCCEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEEECCH
HAIHQKQA
HHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7726514 [H]