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The map label for this gene is ybcM [H]

Identifier: 170024610

GI number: 170024610

Start: 2618583

End: 2619458

Strand: Direct

Name: ybcM [H]

Synonym: YPK_2385

Alternate gene names: 170024610

Gene position: 2618583-2619458 (Clockwise)

Preceding gene: 170024609

Following gene: 170024611

Centisome position: 55.84

GC content: 43.38

Gene sequence:

>876_bases
ATGAAACATAAAATCAGTTTCTGTCCCGGTGTGGGTAGCGCAGCGCATATTATTCAACATTCCGAGTTGCTTCTCACTTC
AGTCTATATTGAGCACCCGTTGCTCATTATGGTTAATCGTGGGTATAAAATTATCCGTTGGGAAAACCAGGAATGCGTTA
TCCTGCCGGGCGAAATTGCAGTTATAAATAGCGGGCAAACTATTGATATTATTAATGGGCTATCTAATGATGACCTGTTC
TTCAGTCAACAACTTCATTGTGACCCGAGTTTGATCGCGGCCTTTGCTCATCACCCTACTTCAGCAGATTTGGGGGTTAT
TCCCGGCGTGATGGCAATCCGTAATTTAGCACCTGAATTCATTAATACGTTTGGCAATATATTTAACTCAATATCAGAAA
ATAGTGATATTCCAACGGTAATCATCAAGCACCGTATGCTTGAGTTATTACTTTGGCTGGCGCAGCGTGATGTTAAATTT
ATATTAAATGACGGTAACGGCTTGAGTGAAAAAGTGCGCCGCTGCTTGGCCAGCGATCCACACAAGATATGGTCCGCTTC
TGAAGTAGCCGAACACATGACAATGAGTGAAGTGGTATTACGGCGAAAGTTAGCAGCAGAAAATATACTCTTACGTGATT
TAATGATCGATGTTCGCATGACCAGTGCACTTCGCCTATTACAAGGCACGGATTGGCCGATCTCATTGATTGCCAATCAA
ATCGGTTATGAAAGTTCATCACGTTTTGCCGAACGTTTTCGTAAGCGCTTTGGTTTTGCACCAACCGCTATTCGCGGCCA
CCATCGCTTGCAACCGGTAGAGAGTGAATCACCGATACACTCAGTTAATCGTTACCTTAAGCCCTCATATTCCTGA

Upstream 100 bases:

>100_bases
CGAAGTGGCTTGCTATGGTAAGTTTTTTATTAAAATAGTTTGCCAGCCTGCTATTCAAAGCGTAAAAATATTATCAAGTC
AAACTATGAAATAAATATTG

Downstream 100 bases:

>100_bases
TTTATTGCAACATAAGGCGTTTGAAGGTTGCCTTCATGCCTATTTATTCCGCCGTTCAATCCCCCTTAATTTATATCATT
CATGCAATTCATTCCCATAA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 291; Mature: 291

Protein sequence:

>291_residues
MKHKISFCPGVGSAAHIIQHSELLLTSVYIEHPLLIMVNRGYKIIRWENQECVILPGEIAVINSGQTIDIINGLSNDDLF
FSQQLHCDPSLIAAFAHHPTSADLGVIPGVMAIRNLAPEFINTFGNIFNSISENSDIPTVIIKHRMLELLLWLAQRDVKF
ILNDGNGLSEKVRRCLASDPHKIWSASEVAEHMTMSEVVLRRKLAAENILLRDLMIDVRMTSALRLLQGTDWPISLIANQ
IGYESSSRFAERFRKRFGFAPTAIRGHHRLQPVESESPIHSVNRYLKPSYS

Sequences:

>Translated_291_residues
MKHKISFCPGVGSAAHIIQHSELLLTSVYIEHPLLIMVNRGYKIIRWENQECVILPGEIAVINSGQTIDIINGLSNDDLF
FSQQLHCDPSLIAAFAHHPTSADLGVIPGVMAIRNLAPEFINTFGNIFNSISENSDIPTVIIKHRMLELLLWLAQRDVKF
ILNDGNGLSEKVRRCLASDPHKIWSASEVAEHMTMSEVVLRRKLAAENILLRDLMIDVRMTSALRLLQGTDWPISLIANQ
IGYESSSRFAERFRKRFGFAPTAIRGHHRLQPVESESPIHSVNRYLKPSYS
>Mature_291_residues
MKHKISFCPGVGSAAHIIQHSELLLTSVYIEHPLLIMVNRGYKIIRWENQECVILPGEIAVINSGQTIDIINGLSNDDLF
FSQQLHCDPSLIAAFAHHPTSADLGVIPGVMAIRNLAPEFINTFGNIFNSISENSDIPTVIIKHRMLELLLWLAQRDVKF
ILNDGNGLSEKVRRCLASDPHKIWSASEVAEHMTMSEVVLRRKLAAENILLRDLMIDVRMTSALRLLQGTDWPISLIANQ
IGYESSSRFAERFRKRFGFAPTAIRGHHRLQPVESESPIHSVNRYLKPSYS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786758, Length=246, Percent_Identity=30.0813008130081, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1789932, Length=143, Percent_Identity=29.3706293706294, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1787776, Length=135, Percent_Identity=28.8888888888889, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 32780; Mature: 32780

Theoretical pI: Translated: 7.73; Mature: 7.73

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKHKISFCPGVGSAAHIIQHSELLLTSVYIEHPLLIMVNRGYKIIRWENQECVILPGEIA
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEECCEEEEEECCCCEEEECCCEE
VINSGQTIDIINGLSNDDLFFSQQLHCDPSLIAAFAHHPTSADLGVIPGVMAIRNLAPEF
EECCCCEEEEECCCCCCCEEECHHCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHH
INTFGNIFNSISENSDIPTVIIKHRMLELLLWLAQRDVKFILNDGNGLSEKVRRCLASDP
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHCCCC
HKIWSASEVAEHMTMSEVVLRRKLAAENILLRDLMIDVRMTSALRLLQGTDWPISLIANQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
IGYESSSRFAERFRKRFGFAPTAIRGHHRLQPVESESPIHSVNRYLKPSYS
HCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCHHHHHHHCCCCCC
>Mature Secondary Structure
MKHKISFCPGVGSAAHIIQHSELLLTSVYIEHPLLIMVNRGYKIIRWENQECVILPGEIA
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEECCEEEEEECCCCEEEECCCEE
VINSGQTIDIINGLSNDDLFFSQQLHCDPSLIAAFAHHPTSADLGVIPGVMAIRNLAPEF
EECCCCEEEEECCCCCCCEEECHHCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHH
INTFGNIFNSISENSDIPTVIIKHRMLELLLWLAQRDVKFILNDGNGLSEKVRRCLASDP
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHCCCC
HKIWSASEVAEHMTMSEVVLRRKLAAENILLRDLMIDVRMTSALRLLQGTDWPISLIANQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
IGYESSSRFAERFRKRFGFAPTAIRGHHRLQPVESESPIHSVNRYLKPSYS
HCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]