Click here to switch to the map view.

The map label for this gene is 170024553

Identifier: 170024553

GI number: 170024553

Start: 2568200

End: 2569015

Strand: Direct

Name: 170024553

Synonym: YPK_2328

Alternate gene names: NA

Gene position: 2568200-2569015 (Clockwise)

Preceding gene: 170024549

Following gene: 170024554

Centisome position: 54.77

GC content: 50.37

Gene sequence:

>816_bases
ATGACCGTAAAAGCAAAAAAATTCCGCATTGGCGTAGAGGGTGCCACCACTGATGGCCGCACCATCACCCGCGAATGGCT
AACGCAAATGGCCGATAGCTACAACACCACGGTATACGGTGCCCGAATCAATATGGAGCACATCAAAGGCTATTCACCAG
ACAGCACCTTTAAACGCTATGGTGATGTGACGGGCCTGAGTGCCGAAGAAATCAAGGACGGGCCGTTATCGGGGAAAATG
GCACTGTATGCCGAAATCAGCCCTACAGCCGATTTGGTAGAAATGGTGAAGGATCGCCAAAAGGTTTACACCTCAATGGA
AGTAAATATTAAATTTGCCGACACCAACAGTGCCTATCTTGTTGGCCTTGCGGTCACTGATGATCCCGCCAGTCTGGGTA
CTGAAATGTTGAATTTCAGCGCCAGCGCCTCCGCTAATCCGCTGGCCTCCCGTAAGCAAGCCCCTGAGAACCTGTTTACC
GCCGCAGAAGAAACGCTGATTGAATTCGAAACCGAGCAAGAACCTAAAACCAACCTGCTTACCACCATTAAAACCCTGTT
TACCAAAAAGCAAACCGGTGATGACGCACGTTTTAACGATGTGCATCAGGCGGTTGAGTTGGTGGCGCAGCAGGTTGAGG
GGAAATTTAGCGCCCTTACCGCGCTGGAACAGCGGTTTTCTGAGCTAAAAACCGCCAATGGTGCGACCCAGCAAGCGCTT
GATGAGCTGAAAACCACGCTCAGTAAAACAGATGGCAATTTCTCCCAACGCGAAAAATCAACCGGCAATGACAGCGCCAT
TCTGACTGATTGCTAA

Upstream 100 bases:

>100_bases
ACCTTGTGCCAGCCATAGCACAAGAGCGCCTGATTGTTCCGTTGGTCGCCGGTCGCCAACATAGGTCACTACTGTATCGA
ATCAGACCGGAGCATCACGC

Downstream 100 bases:

>100_bases
CTCATTCCGCTTGCTACGTTAAGGATTTAATTTCACATGAAAAAAACCACCCGATTTCAGTACAACCAGTTTTTGCAGCA
GGTCGCCCGGCTGAACCATT

Product: capsid scaffolding

Products: NA

Alternate protein names: Capsid Scaffolding; Capsid Scaffolding Protein; Phage Capsid Scaffolding; Capsid Scaffolding Protein O; Phage Capsid Scaffolding Protein GpO; Phage-Related Capsid Scaffolding Protein; V Protein Bacteriophage; Presumed Capsid-Scaffolding Protein; Bacteriophage Protein; Bacteriophage P2 GPO Capsid Protein; Scaffold; Capsid Protein; Presumed Capsid Scaffolding Protein; Capsid Scafolding Protein; Phage-Related Capsid Scaffold Protein; Phage-Related Capsid Scaffold Bacteriophage Protein; Phage P2 Capsid Scaffolding GpO-Like Protein; Prophage Capsid Scaffolding Protein; Flagellar Biosynthesis/Type III Secretory Pathway Protein

Number of amino acids: Translated: 271; Mature: 270

Protein sequence:

>271_residues
MTVKAKKFRIGVEGATTDGRTITREWLTQMADSYNTTVYGARINMEHIKGYSPDSTFKRYGDVTGLSAEEIKDGPLSGKM
ALYAEISPTADLVEMVKDRQKVYTSMEVNIKFADTNSAYLVGLAVTDDPASLGTEMLNFSASASANPLASRKQAPENLFT
AAEETLIEFETEQEPKTNLLTTIKTLFTKKQTGDDARFNDVHQAVELVAQQVEGKFSALTALEQRFSELKTANGATQQAL
DELKTTLSKTDGNFSQREKSTGNDSAILTDC

Sequences:

>Translated_271_residues
MTVKAKKFRIGVEGATTDGRTITREWLTQMADSYNTTVYGARINMEHIKGYSPDSTFKRYGDVTGLSAEEIKDGPLSGKM
ALYAEISPTADLVEMVKDRQKVYTSMEVNIKFADTNSAYLVGLAVTDDPASLGTEMLNFSASASANPLASRKQAPENLFT
AAEETLIEFETEQEPKTNLLTTIKTLFTKKQTGDDARFNDVHQAVELVAQQVEGKFSALTALEQRFSELKTANGATQQAL
DELKTTLSKTDGNFSQREKSTGNDSAILTDC
>Mature_270_residues
TVKAKKFRIGVEGATTDGRTITREWLTQMADSYNTTVYGARINMEHIKGYSPDSTFKRYGDVTGLSAEEIKDGPLSGKMA
LYAEISPTADLVEMVKDRQKVYTSMEVNIKFADTNSAYLVGLAVTDDPASLGTEMLNFSASASANPLASRKQAPENLFTA
AEETLIEFETEQEPKTNLLTTIKTLFTKKQTGDDARFNDVHQAVELVAQQVEGKFSALTALEQRFSELKTANGATQQALD
ELKTTLSKTDGNFSQREKSTGNDSAILTDC

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29685; Mature: 29554

Theoretical pI: Translated: 4.68; Mature: 4.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVKAKKFRIGVEGATTDGRTITREWLTQMADSYNTTVYGARINMEHIKGYSPDSTFKRY
CCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEHHHHCCCCCCHHHHHH
GDVTGLSAEEIKDGPLSGKMALYAEISPTADLVEMVKDRQKVYTSMEVNIKFADTNSAYL
CCCCCCCHHHHCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHEEEEEEEEECCCCEEE
VGLAVTDDPASLGTEMLNFSASASANPLASRKQAPENLFTAAEETLIEFETEQEPKTNLL
EEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHCCCCCCCHHHHH
TTIKTLFTKKQTGDDARFNDVHQAVELVAQQVEGKFSALTALEQRFSELKTANGATQQAL
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHH
DELKTTLSKTDGNFSQREKSTGNDSAILTDC
HHHHHHHHHCCCCHHHHHCCCCCCCEEEECC
>Mature Secondary Structure 
TVKAKKFRIGVEGATTDGRTITREWLTQMADSYNTTVYGARINMEHIKGYSPDSTFKRY
CCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEHHHHCCCCCCHHHHHH
GDVTGLSAEEIKDGPLSGKMALYAEISPTADLVEMVKDRQKVYTSMEVNIKFADTNSAYL
CCCCCCCHHHHCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHEEEEEEEEECCCCEEE
VGLAVTDDPASLGTEMLNFSASASANPLASRKQAPENLFTAAEETLIEFETEQEPKTNLL
EEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHCCCCCCCHHHHH
TTIKTLFTKKQTGDDARFNDVHQAVELVAQQVEGKFSALTALEQRFSELKTANGATQQAL
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHH
DELKTTLSKTDGNFSQREKSTGNDSAILTDC
HHHHHHHHHCCCCHHHHHCCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA