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The map label for this gene is ydcR [H]

Identifier: 170024460

GI number: 170024460

Start: 2473700

End: 2475001

Strand: Reverse

Name: ydcR [H]

Synonym: YPK_2231

Alternate gene names: 170024460

Gene position: 2475001-2473700 (Counterclockwise)

Preceding gene: 170024464

Following gene: 170024459

Centisome position: 52.78

GC content: 51.46

Gene sequence:

>1302_bases
ATGACCGTGGTGCAATCGTATCAGTTGTTGGAAAGCCAGGGGTGGATCGTTGCCCGCCCACAATCGGGCTACTATGTGGC
CTCACGGCCCACGCAGTTACCGCAACCACAGCGGGGTAATAAGCTCCATCTGGATGAACAGGTTGATATCAATACCTTTA
TTTTTAATGTATTACAGGCAGGGAAAGATCCGGCAATCATGCCGTTCGGTTCAGCATTTCCAGATCCGAGTTTATTGTTA
CAACCGCGTTTGTCGCGGGCGTTGGCCAGCGTCGCTCGCAAGATCTCGCCACAAAGTTCTGTAACGAATTTGCCACCGGG
TAATGAAAGTTTACGGCGCAATATTGCGCAACGTTATGCTGCCTGCGGGATGAATGTATCACCCGAGGAAATTGTGATTA
CGGCGGGGGCGATGGAGTCACTGAGCCTTAGCTTACAAGCCGTGACACAGCCCGGTGATTGGGTCGTTATTGAATCGCCC
GCGTTTTATGGTGCATTACAGGCGATTGAACGCCTACGACTTAAGGCTATTGCCATTACGACGGATCCCCAGCAAGGTGT
GGATTTGGAGGCCCTTGAGCAGGTTATCAGCCAGTATCCGATAAAAGCGTGCTGGTTAATGCCCCATTTTCAAAACCCAA
TGGGGGCCACCATGCCGTGGTCACAGAAACAGCGACTCGTCACCCTGCTACAGCAGAAGGCTATTTCACTGATTGAAGAT
GATGTATATGGCGAACTGTATTTTGGTGCTGAACGCTTGCTACCGGCAAAAGCGCTTGACCAGCATCGGCAGATTTTACA
TTGCTCCTCTTTTTCTAAATGCCTGGCGCCGGGGTTCCGTGTGGGGTGGGTGGCAGCAGGTGAACATGCTCAGCGTATTC
AACATTTACAGTTGATGAGCACCGTTTCGGCCAGCGTCCCGACCCAACTGGCGATTGCGGATTATCTGAGCCAAGGGGGA
TACGATACTCACCTGCGCCGCTTGCGTCGGGTAATGGAACAGCGGATGAGCACGTTGCATCAGGCCGTTGTTGAACACTT
CCCCAAAAACATCAAAATCAGCCACCCCGCTGGCGGCTATTTCTTATGGTTAGAATTGGAGCCACCTTTTAATGCCAGTG
AACTGTACCGACGGGCACTGGAGCAGGGGGTTAGCATTGCTCCTGGGAGAATGTTCACCACAGGGAGTCAGTTTGATCAT
TGCTTTCGCCTTAATGCCTCCTTTACCTGGTCAGAACAAAGCGCAAAAGCGATTCGTATTTTGGCGAAGTTAATCGGCCA
ATTGACGAACGAACGTCGATAG

Upstream 100 bases:

>100_bases
AGCGCAGCAAATCAGAGCACAAATACAATCGAAGGTCTGGCAAGCGGGCGATAAGCTCCCTTCGCTGCGAGAAAGTTGTA
AACAATCAGGGCTAAGCCTG

Downstream 100 bases:

>100_bases
CCGTAGAGGCTATTAATGATCATTAATCAACATCAACATCTTCGATCTGTTGACCCAGGTGGCCTCTTAGAATCGGGGCT
ACACCCGCATTCCTCTCTGC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 433; Mature: 432

Protein sequence:

>433_residues
MTVVQSYQLLESQGWIVARPQSGYYVASRPTQLPQPQRGNKLHLDEQVDINTFIFNVLQAGKDPAIMPFGSAFPDPSLLL
QPRLSRALASVARKISPQSSVTNLPPGNESLRRNIAQRYAACGMNVSPEEIVITAGAMESLSLSLQAVTQPGDWVVIESP
AFYGALQAIERLRLKAIAITTDPQQGVDLEALEQVISQYPIKACWLMPHFQNPMGATMPWSQKQRLVTLLQQKAISLIED
DVYGELYFGAERLLPAKALDQHRQILHCSSFSKCLAPGFRVGWVAAGEHAQRIQHLQLMSTVSASVPTQLAIADYLSQGG
YDTHLRRLRRVMEQRMSTLHQAVVEHFPKNIKISHPAGGYFLWLELEPPFNASELYRRALEQGVSIAPGRMFTTGSQFDH
CFRLNASFTWSEQSAKAIRILAKLIGQLTNERR

Sequences:

>Translated_433_residues
MTVVQSYQLLESQGWIVARPQSGYYVASRPTQLPQPQRGNKLHLDEQVDINTFIFNVLQAGKDPAIMPFGSAFPDPSLLL
QPRLSRALASVARKISPQSSVTNLPPGNESLRRNIAQRYAACGMNVSPEEIVITAGAMESLSLSLQAVTQPGDWVVIESP
AFYGALQAIERLRLKAIAITTDPQQGVDLEALEQVISQYPIKACWLMPHFQNPMGATMPWSQKQRLVTLLQQKAISLIED
DVYGELYFGAERLLPAKALDQHRQILHCSSFSKCLAPGFRVGWVAAGEHAQRIQHLQLMSTVSASVPTQLAIADYLSQGG
YDTHLRRLRRVMEQRMSTLHQAVVEHFPKNIKISHPAGGYFLWLELEPPFNASELYRRALEQGVSIAPGRMFTTGSQFDH
CFRLNASFTWSEQSAKAIRILAKLIGQLTNERR
>Mature_432_residues
TVVQSYQLLESQGWIVARPQSGYYVASRPTQLPQPQRGNKLHLDEQVDINTFIFNVLQAGKDPAIMPFGSAFPDPSLLLQ
PRLSRALASVARKISPQSSVTNLPPGNESLRRNIAQRYAACGMNVSPEEIVITAGAMESLSLSLQAVTQPGDWVVIESPA
FYGALQAIERLRLKAIAITTDPQQGVDLEALEQVISQYPIKACWLMPHFQNPMGATMPWSQKQRLVTLLQQKAISLIEDD
VYGELYFGAERLLPAKALDQHRQILHCSSFSKCLAPGFRVGWVAAGEHAQRIQHLQLMSTVSASVPTQLAIADYLSQGGY
DTHLRRLRRVMEQRMSTLHQAVVEHFPKNIKISHPAGGYFLWLELEPPFNASELYRRALEQGVSIAPGRMFTTGSQFDHC
FRLNASFTWSEQSAKAIRILAKLIGQLTNERR

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=319, Percent_Identity=26.3322884012539, Blast_Score=108, Evalue=1e-23,
Organism=Homo sapiens, GI33469970, Length=319, Percent_Identity=26.3322884012539, Blast_Score=108, Evalue=1e-23,
Organism=Homo sapiens, GI4507369, Length=181, Percent_Identity=24.3093922651934, Blast_Score=77, Evalue=4e-14,
Organism=Escherichia coli, GI1787710, Length=425, Percent_Identity=56.9411764705882, Blast_Score=511, Evalue=1e-146,
Organism=Escherichia coli, GI1790797, Length=428, Percent_Identity=35.0467289719626, Blast_Score=270, Evalue=1e-73,
Organism=Saccharomyces cerevisiae, GI6321000, Length=243, Percent_Identity=27.1604938271605, Blast_Score=84, Evalue=5e-17,
Organism=Drosophila melanogaster, GI21356535, Length=374, Percent_Identity=23.7967914438503, Blast_Score=86, Evalue=4e-17,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 48326; Mature: 48195

Theoretical pI: Translated: 9.08; Mature: 9.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVVQSYQLLESQGWIVARPQSGYYVASRPTQLPQPQRGNKLHLDEQVDINTFIFNVLQA
CCCHHHHHHHHCCCCEEECCCCCEEEECCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHC
GKDPAIMPFGSAFPDPSLLLQPRLSRALASVARKISPQSSVTNLPPGNESLRRNIAQRYA
CCCCCCCCCCCCCCCCCHHHCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHH
ACGMNVSPEEIVITAGAMESLSLSLQAVTQPGDWVVIESPAFYGALQAIERLRLKAIAIT
HCCCCCCCCCEEEECCCHHHHHEEEEEECCCCCEEEECCCHHHHHHHHHHHHHEEEEEEE
TDPQQGVDLEALEQVISQYPIKACWLMPHFQNPMGATMPWSQKQRLVTLLQQKAISLIED
CCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
DVYGELYFGAERLLPAKALDQHRQILHCSSFSKCLAPGFRVGWVAAGEHAQRIQHLQLMS
HHHHHHHHCHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH
TVSASVPTQLAIADYLSQGGYDTHLRRLRRVMEQRMSTLHQAVVEHFPKNIKISHPAGGY
HHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCE
FLWLELEPPFNASELYRRALEQGVSIAPGRMFTTGSQFDHCFRLNASFTWSEQSAKAIRI
EEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEECCCCCCCEEEECCCEEECHHHHHHHHH
LAKLIGQLTNERR
HHHHHHHHHCCCC
>Mature Secondary Structure 
TVVQSYQLLESQGWIVARPQSGYYVASRPTQLPQPQRGNKLHLDEQVDINTFIFNVLQA
CCHHHHHHHHCCCCEEECCCCCEEEECCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHC
GKDPAIMPFGSAFPDPSLLLQPRLSRALASVARKISPQSSVTNLPPGNESLRRNIAQRYA
CCCCCCCCCCCCCCCCCHHHCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHH
ACGMNVSPEEIVITAGAMESLSLSLQAVTQPGDWVVIESPAFYGALQAIERLRLKAIAIT
HCCCCCCCCCEEEECCCHHHHHEEEEEECCCCCEEEECCCHHHHHHHHHHHHHEEEEEEE
TDPQQGVDLEALEQVISQYPIKACWLMPHFQNPMGATMPWSQKQRLVTLLQQKAISLIED
CCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
DVYGELYFGAERLLPAKALDQHRQILHCSSFSKCLAPGFRVGWVAAGEHAQRIQHLQLMS
HHHHHHHHCHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH
TVSASVPTQLAIADYLSQGGYDTHLRRLRRVMEQRMSTLHQAVVEHFPKNIKISHPAGGY
HHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCE
FLWLELEPPFNASELYRRALEQGVSIAPGRMFTTGSQFDHCFRLNASFTWSEQSAKAIRI
EEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEECCCCCCCEEEECCCEEECHHHHHHHHH
LAKLIGQLTNERR
HHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]