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The map label for this gene is ybjS [H]

Identifier: 170024445

GI number: 170024445

Start: 2454464

End: 2455480

Strand: Reverse

Name: ybjS [H]

Synonym: YPK_2216

Alternate gene names: 170024445

Gene position: 2455480-2454464 (Counterclockwise)

Preceding gene: 170024446

Following gene: 170024444

Centisome position: 52.36

GC content: 53.49

Gene sequence:

>1017_bases
ATGAAAGTCTTAGTGACAGGGGCAACCAGTGGATTGGGGCGCAACGCAGCACAATGGCTGTTGGAGGCAGGGCACGAGGT
TTATGCTATCGGGCGGGATCAACTGGCGGGGGAAGAACTGCGCAAGTTGGGCGCCACCTTTATTCCGCTGGATCTGACCA
TGACCACGATGGAGGTCTGCCAGCAATGGCTCAAAACGTGCGATGTGGTTTGGCACTGTGCCGCCAAATCAGCACCGTGG
GGTAACCCACAGGATTTTCACCAAACCAATGTGGTGGTGACGCATAAACTTGCTCAGGCCGCCGGTCGCGAGGGGGTTAA
ACGGTTCATTCATATCTCATCACCTGCCGTGTATTTCGATTTTCGCCATCATCATGATCTGCCTGAAACATACCGGGCCA
GCCGCTTTTCCAGCCACTATGCCAGCAGTAAATATGCGGCGGAGCAGGTGTTGCATGAATGTATCGCTCATTATCCGGAC
ACCACGTATGTGATCCTGCGCCCACGTGGGCTATTTGGTCCCCACGATAGGGTGATTGTGCCGCGTTTGCTGCAACAACT
GAGCAGGGATCGCAATGTGCTGCGTTTACCGGGAGGAGGGCAAGCGCAGCTTGATCTCACGTTTGTGTTGAATGTGGTAC
ATGCCATGATGTTAGCCACTGATAACGACGGGCTACGCTCCGGTGCGATTTATAATATTACCAATCAGGAGCCACAACGG
CTGGTGACGATGTTGGATTCTCTGTTGAATCAGCAGCTTCACATTAACTATACCTTGCAGCCGGTGCCCTACTCGTTACT
TTCTGTCGTGGCGGCAGGGATGGAACTGGTCGCCAGTATGACCCAGAAAGAACCGCTGTTAACCCGTTACAGTGTTGGCG
CAGTCTATTTTGATATGACCCTTAATTCAGAACGTGCTGTTAATGAACTGGGCTACCGGCCTCGTTACTCGATGGCTGAG
GGGATTGTGCTGGCTGGCGAGTGGCTTAGTGCGCAGAGGAGTGGCCAGCATGGCTAA

Upstream 100 bases:

>100_bases
AGCGGGCGCTTTTCGCCGGGTAAACCGGTGATGCTTATTGGTACCGCAGCAGGGTTGACGCTGGCGGGGATGGTTTTGCT
GCCATGAGAGCCTTACGATC

Downstream 100 bases:

>100_bases
GATCACTACGTTTGAAGTGGGCTATTGCACACACCTTGCCTGCATGGCGCTTAAAGGCGCCCCTTTTCGTGTTTGCAAGT
TCCCGGCACGCGCCTGTTTG

Product: NAD-dependent epimerase/dehydratase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 338; Mature: 338

Protein sequence:

>338_residues
MKVLVTGATSGLGRNAAQWLLEAGHEVYAIGRDQLAGEELRKLGATFIPLDLTMTTMEVCQQWLKTCDVVWHCAAKSAPW
GNPQDFHQTNVVVTHKLAQAAGREGVKRFIHISSPAVYFDFRHHHDLPETYRASRFSSHYASSKYAAEQVLHECIAHYPD
TTYVILRPRGLFGPHDRVIVPRLLQQLSRDRNVLRLPGGGQAQLDLTFVLNVVHAMMLATDNDGLRSGAIYNITNQEPQR
LVTMLDSLLNQQLHINYTLQPVPYSLLSVVAAGMELVASMTQKEPLLTRYSVGAVYFDMTLNSERAVNELGYRPRYSMAE
GIVLAGEWLSAQRSGQHG

Sequences:

>Translated_338_residues
MKVLVTGATSGLGRNAAQWLLEAGHEVYAIGRDQLAGEELRKLGATFIPLDLTMTTMEVCQQWLKTCDVVWHCAAKSAPW
GNPQDFHQTNVVVTHKLAQAAGREGVKRFIHISSPAVYFDFRHHHDLPETYRASRFSSHYASSKYAAEQVLHECIAHYPD
TTYVILRPRGLFGPHDRVIVPRLLQQLSRDRNVLRLPGGGQAQLDLTFVLNVVHAMMLATDNDGLRSGAIYNITNQEPQR
LVTMLDSLLNQQLHINYTLQPVPYSLLSVVAAGMELVASMTQKEPLLTRYSVGAVYFDMTLNSERAVNELGYRPRYSMAE
GIVLAGEWLSAQRSGQHG
>Mature_338_residues
MKVLVTGATSGLGRNAAQWLLEAGHEVYAIGRDQLAGEELRKLGATFIPLDLTMTTMEVCQQWLKTCDVVWHCAAKSAPW
GNPQDFHQTNVVVTHKLAQAAGREGVKRFIHISSPAVYFDFRHHHDLPETYRASRFSSHYASSKYAAEQVLHECIAHYPD
TTYVILRPRGLFGPHDRVIVPRLLQQLSRDRNVLRLPGGGQAQLDLTFVLNVVHAMMLATDNDGLRSGAIYNITNQEPQR
LVTMLDSLLNQQLHINYTLQPVPYSLLSVVAAGMELVASMTQKEPLLTRYSVGAVYFDMTLNSERAVNELGYRPRYSMAE
GIVLAGEWLSAQRSGQHG

Specific function: Unknown

COG id: COG0451

COG function: function code MG; Nucleoside-diphosphate-sugar epimerases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI193211614, Length=337, Percent_Identity=26.4094955489614, Blast_Score=92, Evalue=8e-19,
Organism=Homo sapiens, GI8393516, Length=337, Percent_Identity=26.4094955489614, Blast_Score=92, Evalue=8e-19,
Organism=Escherichia coli, GI87081792, Length=331, Percent_Identity=44.4108761329305, Blast_Score=286, Evalue=1e-78,
Organism=Caenorhabditis elegans, GI17509709, Length=268, Percent_Identity=26.4925373134328, Blast_Score=80, Evalue=2e-15,
Organism=Saccharomyces cerevisiae, GI6321437, Length=270, Percent_Identity=28.1481481481481, Blast_Score=83, Evalue=7e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001509
- InterPro:   IPR016040 [H]

Pfam domain/function: PF01370 Epimerase [H]

EC number: NA

Molecular weight: Translated: 37751; Mature: 37751

Theoretical pI: Translated: 7.75; Mature: 7.75

Prosite motif: PS00639 THIOL_PROTEASE_HIS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVLVTGATSGLGRNAAQWLLEAGHEVYAIGRDQLAGEELRKLGATFIPLDLTMTTMEVC
CEEEEECCCCCCCHHHHHHHHHCCCEEEEECCHHHCHHHHHHCCCEEEEHHHHHHHHHHH
QQWLKTCDVVWHCAAKSAPWGNPQDFHQTNVVVTHKLAQAAGREGVKRFIHISSPAVYFD
HHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHEEECCCEEEEE
FRHHHDLPETYRASRFSSHYASSKYAAEQVLHECIAHYPDTTYVILRPRGLFGPHDRVIV
EHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHH
PRLLQQLSRDRNVLRLPGGGQAQLDLTFVLNVVHAMMLATDNDGLRSGAIYNITNQEPQR
HHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCHHH
LVTMLDSLLNQQLHINYTLQPVPYSLLSVVAAGMELVASMTQKEPLLTRYSVGAVYFDMT
HHHHHHHHHCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCHHEEECCEEEEEEE
LNSERAVNELGYRPRYSMAEGIVLAGEWLSAQRSGQHG
ECCHHHHHHHCCCCCCHHHCCEEEECHHHHHCCCCCCC
>Mature Secondary Structure
MKVLVTGATSGLGRNAAQWLLEAGHEVYAIGRDQLAGEELRKLGATFIPLDLTMTTMEVC
CEEEEECCCCCCCHHHHHHHHHCCCEEEEECCHHHCHHHHHHCCCEEEEHHHHHHHHHHH
QQWLKTCDVVWHCAAKSAPWGNPQDFHQTNVVVTHKLAQAAGREGVKRFIHISSPAVYFD
HHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHEEECCCEEEEE
FRHHHDLPETYRASRFSSHYASSKYAAEQVLHECIAHYPDTTYVILRPRGLFGPHDRVIV
EHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHH
PRLLQQLSRDRNVLRLPGGGQAQLDLTFVLNVVHAMMLATDNDGLRSGAIYNITNQEPQR
HHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCHHH
LVTMLDSLLNQQLHINYTLQPVPYSLLSVVAAGMELVASMTQKEPLLTRYSVGAVYFDMT
HHHHHHHHHCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCHHEEECCEEEEEEE
LNSERAVNELGYRPRYSMAEGIVLAGEWLSAQRSGQHG
ECCHHHHHHHCCCCCCHHHCCEEEECHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]