Click here to switch to the map view.

The map label for this gene is ydgJ [H]

Identifier: 170024230

GI number: 170024230

Start: 2217119

End: 2218168

Strand: Reverse

Name: ydgJ [H]

Synonym: YPK_1995

Alternate gene names: 170024230

Gene position: 2218168-2217119 (Counterclockwise)

Preceding gene: 170024231

Following gene: 170024229

Centisome position: 47.3

GC content: 49.9

Gene sequence:

>1050_bases
ATGGCTGATAAGATAAAAGTAGGTTTACTGGGCTACGGTTATGCCAGTAAAACGTTTCATGCGCCGTTAATTATGGGCAC
ACCGGGCTTAGAACTGGCTGGAGTTTCCAGCAGTGATGCCAGTAAAGTGCATGCCGATTGGCCTGCAATACCGGTAGTAT
CTGACCCTCAGATGTTATTCAATGATCCCTCTATCGATCTCATTGTTATTCCCACGCCCAATGATACCCACTTCCCATTA
GCGCAGAGCGCACTGGCTGCCGGTAAACATGTGGTAGTTGATAAACCCTTTACCGTGACGTTGTCACAAGCAAACGCGTT
AAAAGAGCACGCTGATGATGCAGGTTTACTGTTATCAGTATTCCACAATCGCCGTTGGGACAGTGACTTCCTGACGTTAA
AAACGTTACTGGCCGAAGGCTCGCTGGGGAACGTTGTCTATTTCGAATCTCACTTTGATCGCTACCGCCCGGAAATCCGT
CAACGCTGGCGTGAACAAGCCGGTGCGGGAGGGGGCATCTGGTATGATTTAGGGCCACATTTACTGGACCAAGCGTTACA
ACTGTTTGGTCTGCCAGAAACGTTGAATGTCGATCTGGGCATGTTGCGCCCAGGCTCTCAATCTGTTGACTATTTCCACG
CGGTTCTCAGCTATCCGGGGCAACGCGTTGTACTGCATAGCACGGTATTGGCTGCGGCAGAAACGGCGCGTTATATTGTG
CACGGTACGCAGGGCAGCTATATCAAGTTTGGTGTGGATCCACAGGAAGACCGTTTGAAAGCCGGTGAGCGTTTACCACA
GGCTGACTGGGGCTACGATATGCGTGATGGAATCGTGACACTGTCACATGATAATGTGCTTACCGAGAAACCGCTACTGA
CGCTGCCGGGGAATTATCCTGCGTACTATGCCGGTATCCGTGATGCTATTTGGGGCACTGCGCCTAATCCGGTTCCAGCC
ACTGAAGCGATTAAAGTCATGGAGTTGATTGAGTTGGGTATTGCTTCAGATCAACAGAAAAAAGCACTGCCGATCATTGC
TAAAAATTGA

Upstream 100 bases:

>100_bases
TACCCCTTGTCCCTGGATGCATCATAGTGTCAAATCGATTAATCGTGTGATATCTAATTGCGATATCAAATAGCGGGTAT
TCTGGGTAAGAGGAAAGGTA

Downstream 100 bases:

>100_bases
TGTTTATCCCGCTCTAATGGGGCGGAGTAAGGGTGGAAATATCTCTCTGGGCACAATCTCCGTGGCCCAGAGTTTTTTTA
TTTTTTTAAAGACAAACCAT

Product: putative oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 349; Mature: 348

Protein sequence:

>349_residues
MADKIKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSDASKVHADWPAIPVVSDPQMLFNDPSIDLIVIPTPNDTHFPL
AQSALAAGKHVVVDKPFTVTLSQANALKEHADDAGLLLSVFHNRRWDSDFLTLKTLLAEGSLGNVVYFESHFDRYRPEIR
QRWREQAGAGGGIWYDLGPHLLDQALQLFGLPETLNVDLGMLRPGSQSVDYFHAVLSYPGQRVVLHSTVLAAAETARYIV
HGTQGSYIKFGVDPQEDRLKAGERLPQADWGYDMRDGIVTLSHDNVLTEKPLLTLPGNYPAYYAGIRDAIWGTAPNPVPA
TEAIKVMELIELGIASDQQKKALPIIAKN

Sequences:

>Translated_349_residues
MADKIKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSDASKVHADWPAIPVVSDPQMLFNDPSIDLIVIPTPNDTHFPL
AQSALAAGKHVVVDKPFTVTLSQANALKEHADDAGLLLSVFHNRRWDSDFLTLKTLLAEGSLGNVVYFESHFDRYRPEIR
QRWREQAGAGGGIWYDLGPHLLDQALQLFGLPETLNVDLGMLRPGSQSVDYFHAVLSYPGQRVVLHSTVLAAAETARYIV
HGTQGSYIKFGVDPQEDRLKAGERLPQADWGYDMRDGIVTLSHDNVLTEKPLLTLPGNYPAYYAGIRDAIWGTAPNPVPA
TEAIKVMELIELGIASDQQKKALPIIAKN
>Mature_348_residues
ADKIKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSDASKVHADWPAIPVVSDPQMLFNDPSIDLIVIPTPNDTHFPLA
QSALAAGKHVVVDKPFTVTLSQANALKEHADDAGLLLSVFHNRRWDSDFLTLKTLLAEGSLGNVVYFESHFDRYRPEIRQ
RWREQAGAGGGIWYDLGPHLLDQALQLFGLPETLNVDLGMLRPGSQSVDYFHAVLSYPGQRVVLHSTVLAAAETARYIVH
GTQGSYIKFGVDPQEDRLKAGERLPQADWGYDMRDGIVTLSHDNVLTEKPLLTLPGNYPAYYAGIRDAIWGTAPNPVPAT
EAIKVMELIELGIASDQQKKALPIIAKN

Specific function: Unknown

COG id: COG0673

COG function: function code R; Predicted dehydrogenases and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family [H]

Homologues:

Organism=Escherichia coli, GI87081947, Length=345, Percent_Identity=71.304347826087, Blast_Score=520, Evalue=1e-149,
Organism=Escherichia coli, GI1789848, Length=335, Percent_Identity=33.7313432835821, Blast_Score=182, Evalue=2e-47,
Organism=Escherichia coli, GI1787574, Length=198, Percent_Identity=27.2727272727273, Blast_Score=71, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000683
- InterPro:   IPR004104 [H]

Pfam domain/function: PF01408 GFO_IDH_MocA; PF02894 GFO_IDH_MocA_C [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 38126; Mature: 37995

Theoretical pI: Translated: 5.91; Mature: 5.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADKIKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSDASKVHADWPAIPVVSDPQMLF
CCCCEEEEEEECCCCCCCCCCCEEECCCCCEEECCCCCCCCEEECCCCCCCCCCCCHHHC
NDPSIDLIVIPTPNDTHFPLAQSALAAGKHVVVDKPFTVTLSQANALKEHADDAGLLLSV
CCCCEEEEEEECCCCCCCCHHHHHHHCCCEEEECCCEEEEEHHHHHHHHHCCCHHHHHHH
FHNRRWDSDFLTLKTLLAEGSLGNVVYFESHFDRYRPEIRQRWREQAGAGGGIWYDLGPH
HHCCCCCCHHHHHHHHHHCCCCCCEEEEECHHHHCCHHHHHHHHHHCCCCCCEEECCCHH
LLDQALQLFGLPETLNVDLGMLRPGSQSVDYFHAVLSYPGQRVVLHSTVLAAAETARYIV
HHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCEEEEHHHHHHHHHHCEEEE
HGTQGSYIKFGVDPQEDRLKAGERLPQADWGYDMRDGIVTLSHDNVLTEKPLLTLPGNYP
ECCCCCEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEECCCEECCCCEEECCCCCC
AYYAGIRDAIWGTAPNPVPATEAIKVMELIELGIASDQQKKALPIIAKN
HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEECC
>Mature Secondary Structure 
ADKIKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSDASKVHADWPAIPVVSDPQMLF
CCCEEEEEEECCCCCCCCCCCEEECCCCCEEECCCCCCCCEEECCCCCCCCCCCCHHHC
NDPSIDLIVIPTPNDTHFPLAQSALAAGKHVVVDKPFTVTLSQANALKEHADDAGLLLSV
CCCCEEEEEEECCCCCCCCHHHHHHHCCCEEEECCCEEEEEHHHHHHHHHCCCHHHHHHH
FHNRRWDSDFLTLKTLLAEGSLGNVVYFESHFDRYRPEIRQRWREQAGAGGGIWYDLGPH
HHCCCCCCHHHHHHHHHHCCCCCCEEEEECHHHHCCHHHHHHHHHHCCCCCCEEECCCHH
LLDQALQLFGLPETLNVDLGMLRPGSQSVDYFHAVLSYPGQRVVLHSTVLAAAETARYIV
HHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCEEEEHHHHHHHHHHCEEEE
HGTQGSYIKFGVDPQEDRLKAGERLPQADWGYDMRDGIVTLSHDNVLTEKPLLTLPGNYP
ECCCCCEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEECCCEECCCCEEECCCCCC
AYYAGIRDAIWGTAPNPVPATEAIKVMELIELGIASDQQKKALPIIAKN
HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]