Click here to switch to the map view.

The map label for this gene is ydjN [H]

Identifier: 170024034

GI number: 170024034

Start: 1994403

End: 1995794

Strand: Reverse

Name: ydjN [H]

Synonym: YPK_1795

Alternate gene names: 170024034

Gene position: 1995794-1994403 (Counterclockwise)

Preceding gene: 170024035

Following gene: 170024030

Centisome position: 42.56

GC content: 47.2

Gene sequence:

>1392_bases
ATGAATTTACCACTTGTGGTTAATGTGCTGGTATTTGCAGCACTGCTATTGCTCTTAGCACAAACTCGGCATAAACAGTG
GAGTTTGGCTAAAAAAGTATTGATCGGCTTAGTACTGGGTGTGCTGTTTGGTTCAGGGCTGCAATGGGTCTATGGCGCAG
ATAATCCAATACTGAAAGAGTCTATTACTTGGTTTAATATTATTGGCAACGGCTATGTGCAACTCTTGCAAATGATTGTT
ATGCCGCTGGTATTCGCCTCAATTTTGAGCGCGGTAGCTAAACTGCACAATGCGTCATCTCTGGGTAAAATCAGTATTTT
GACCATTGGTACTTTGCTCTTTACGACATTAATTGCCGCCTTGGTTGGTGTATTCGTGACCAACTTATTTGGTCTGACGG
CCGAGGGGTTGATACAAGGTACTCAGGAAACAGCCCGTCTAAGCGCAATTGAGAGTAATTATCTAGGCAAAGTAGCCGAC
CTGACTGTGCCACAGCTGATCTTGTCATTTATTCCCAAAAATCCGTTTGCCGATTTAACGGGTGCCAGCCCAACGTCAAT
CATCAGTATTGTAATATTCGCAACCTTCCTCGGTATCGCGGCGCTACAACTGTTAAAAGATGATGTCACGAAGGGCCAAC
GTGTACTGGCAGCGATTGATACGCTGCAAGCTTGGGTGATGAAGTTAGTTCGATTAGTGATGAAGTTGACCCCATACGGT
GTATTGGCACTGATGACCAAAGTGGTTGCCGGTTCTAATATTCAGGACATTATGAAACTGGGCAGCTTTGTTGTGGCATC
ATATCTGGGCTTGGCCATCATGTTTGTTGTCCATGCGGTGTTGCTGTCGCTCACGGGTATCAATCCGCTGAAATTCTTTA
AAAAAGTGTGGCCGGTACTGACTTTTGCGTTTACCAGCCGCTCCAGTGCCGCCAGTATTCCATTAAATGTTGAAGCGCAA
ACCCGCCGTCTGGGTGTCCCAGAATCTATCGCTAGCTTCTCAGCGTCTTTTGGAGCAACTATTGGGCAAAATGGCTGTGC
GGGCCTGTATCCAGCGATGTTGGCGGTCATGGTGGCACCAACGGTTGGTATTAACCCGTTGGATCCGGTATGGATTGCTA
CTCTGGTCGGGATTGTTACTATCAGTTCTGCGGGTGTTGCCGGTGTGGGTGGCGGTGCAACCTTCGCCGCCCTAATTGTA
CTGCCCGCATTGGGCTTGCCGGTGACATTGGTTGCGTTACTTATCTCCGTTGAGCCATTGATTGATATGGGCCGTACGGC
ATTGAACGTCAATGGCTCAATGACTGCCGGGACGATCACCAGCCAATTAATGAAGCAAACAGATAAAAACATTTTGAATA
ATGAAGATGACGACGTTCTGACTCACCAGTAA

Upstream 100 bases:

>100_bases
TAACTGCTACCATATACGGCTAGCTGCACCACCGTCGTGCATCGTACTTGGCTGTATAAAATAAAATGCGTCAATATAAT
AATATTTTGGAGATTTGGGG

Downstream 100 bases:

>100_bases
ACGCTAATTTGGCCATTATTAAGACCGTCAGATCAAGCTAGTCACTTTTTAGCCCCCAACCGTGGGTACCCCACGAGTGA
GTCGCTTTATTTTTGACTGG

Product: sodium:dicarboxylate symporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 463; Mature: 463

Protein sequence:

>463_residues
MNLPLVVNVLVFAALLLLLAQTRHKQWSLAKKVLIGLVLGVLFGSGLQWVYGADNPILKESITWFNIIGNGYVQLLQMIV
MPLVFASILSAVAKLHNASSLGKISILTIGTLLFTTLIAALVGVFVTNLFGLTAEGLIQGTQETARLSAIESNYLGKVAD
LTVPQLILSFIPKNPFADLTGASPTSIISIVIFATFLGIAALQLLKDDVTKGQRVLAAIDTLQAWVMKLVRLVMKLTPYG
VLALMTKVVAGSNIQDIMKLGSFVVASYLGLAIMFVVHAVLLSLTGINPLKFFKKVWPVLTFAFTSRSSAASIPLNVEAQ
TRRLGVPESIASFSASFGATIGQNGCAGLYPAMLAVMVAPTVGINPLDPVWIATLVGIVTISSAGVAGVGGGATFAALIV
LPALGLPVTLVALLISVEPLIDMGRTALNVNGSMTAGTITSQLMKQTDKNILNNEDDDVLTHQ

Sequences:

>Translated_463_residues
MNLPLVVNVLVFAALLLLLAQTRHKQWSLAKKVLIGLVLGVLFGSGLQWVYGADNPILKESITWFNIIGNGYVQLLQMIV
MPLVFASILSAVAKLHNASSLGKISILTIGTLLFTTLIAALVGVFVTNLFGLTAEGLIQGTQETARLSAIESNYLGKVAD
LTVPQLILSFIPKNPFADLTGASPTSIISIVIFATFLGIAALQLLKDDVTKGQRVLAAIDTLQAWVMKLVRLVMKLTPYG
VLALMTKVVAGSNIQDIMKLGSFVVASYLGLAIMFVVHAVLLSLTGINPLKFFKKVWPVLTFAFTSRSSAASIPLNVEAQ
TRRLGVPESIASFSASFGATIGQNGCAGLYPAMLAVMVAPTVGINPLDPVWIATLVGIVTISSAGVAGVGGGATFAALIV
LPALGLPVTLVALLISVEPLIDMGRTALNVNGSMTAGTITSQLMKQTDKNILNNEDDDVLTHQ
>Mature_463_residues
MNLPLVVNVLVFAALLLLLAQTRHKQWSLAKKVLIGLVLGVLFGSGLQWVYGADNPILKESITWFNIIGNGYVQLLQMIV
MPLVFASILSAVAKLHNASSLGKISILTIGTLLFTTLIAALVGVFVTNLFGLTAEGLIQGTQETARLSAIESNYLGKVAD
LTVPQLILSFIPKNPFADLTGASPTSIISIVIFATFLGIAALQLLKDDVTKGQRVLAAIDTLQAWVMKLVRLVMKLTPYG
VLALMTKVVAGSNIQDIMKLGSFVVASYLGLAIMFVVHAVLLSLTGINPLKFFKKVWPVLTFAFTSRSSAASIPLNVEAQ
TRRLGVPESIASFSASFGATIGQNGCAGLYPAMLAVMVAPTVGINPLDPVWIATLVGIVTISSAGVAGVGGGATFAALIV
LPALGLPVTLVALLISVEPLIDMGRTALNVNGSMTAGTITSQLMKQTDKNILNNEDDDVLTHQ

Specific function: Unknown

COG id: COG1823

COG function: function code R; Predicted Na+/dicarboxylate symporter

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:dicarboxylate (SDF) symporter (TC 2.A.23) family [H]

Homologues:

Organism=Homo sapiens, GI194239697, Length=442, Percent_Identity=24.2081447963801, Blast_Score=103, Evalue=4e-22,
Organism=Homo sapiens, GI223468564, Length=274, Percent_Identity=28.4671532846715, Blast_Score=96, Evalue=6e-20,
Organism=Homo sapiens, GI223468566, Length=274, Percent_Identity=28.4671532846715, Blast_Score=95, Evalue=1e-19,
Organism=Homo sapiens, GI5032093, Length=277, Percent_Identity=28.5198555956679, Blast_Score=92, Evalue=7e-19,
Organism=Homo sapiens, GI21314632, Length=272, Percent_Identity=29.0441176470588, Blast_Score=89, Evalue=9e-18,
Organism=Homo sapiens, GI66773030, Length=437, Percent_Identity=26.3157894736842, Blast_Score=88, Evalue=2e-17,
Organism=Homo sapiens, GI40254478, Length=268, Percent_Identity=29.1044776119403, Blast_Score=85, Evalue=2e-16,
Organism=Homo sapiens, GI169790839, Length=247, Percent_Identity=28.7449392712551, Blast_Score=78, Evalue=1e-14,
Organism=Homo sapiens, GI4827012, Length=244, Percent_Identity=28.2786885245902, Blast_Score=75, Evalue=1e-13,
Organism=Escherichia coli, GI1788024, Length=463, Percent_Identity=83.8012958963283, Blast_Score=744, Evalue=0.0,
Organism=Escherichia coli, GI1790514, Length=453, Percent_Identity=25.60706401766, Blast_Score=116, Evalue=3e-27,
Organism=Escherichia coli, GI1789947, Length=445, Percent_Identity=23.3707865168539, Blast_Score=113, Evalue=3e-26,
Organism=Caenorhabditis elegans, GI193206505, Length=460, Percent_Identity=25.4347826086956, Blast_Score=112, Evalue=6e-25,
Organism=Caenorhabditis elegans, GI71983106, Length=447, Percent_Identity=26.8456375838926, Blast_Score=112, Evalue=6e-25,
Organism=Caenorhabditis elegans, GI71983099, Length=447, Percent_Identity=26.8456375838926, Blast_Score=111, Evalue=7e-25,
Organism=Caenorhabditis elegans, GI17541374, Length=455, Percent_Identity=26.3736263736264, Blast_Score=107, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI71996953, Length=457, Percent_Identity=25.382932166302, Blast_Score=105, Evalue=6e-23,
Organism=Caenorhabditis elegans, GI193206654, Length=483, Percent_Identity=25.879917184265, Blast_Score=98, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI17537407, Length=450, Percent_Identity=25.3333333333333, Blast_Score=88, Evalue=8e-18,
Organism=Drosophila melanogaster, GI24583025, Length=445, Percent_Identity=24.7191011235955, Blast_Score=78, Evalue=2e-14,
Organism=Drosophila melanogaster, GI17137668, Length=445, Percent_Identity=24.7191011235955, Blast_Score=78, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24583023, Length=445, Percent_Identity=24.7191011235955, Blast_Score=78, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001991 [H]

Pfam domain/function: PF00375 SDF [H]

EC number: NA

Molecular weight: Translated: 48801; Mature: 48801

Theoretical pI: Translated: 9.85; Mature: 9.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure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HHCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]