| Definition | Yersinia pseudotuberculosis YPIII chromosome, complete genome. |
|---|---|
| Accession | NC_010465 |
| Length | 4,689,441 |
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The map label for this gene is menD [H]
Identifier: 170023830
GI number: 170023830
Start: 1757206
End: 1758909
Strand: Direct
Name: menD [H]
Synonym: YPK_1589
Alternate gene names: 170023830
Gene position: 1757206-1758909 (Clockwise)
Preceding gene: 170023829
Following gene: 170023831
Centisome position: 37.47
GC content: 56.57
Gene sequence:
>1704_bases ATGTCGACAAGTGTTTTTAACCGTCGTTGGGCGGCACTGCTACTGGAGGCTTTGACCCGCCACGGTGTGCGTCATATCTG TATTGCCCCAGGGTCTCGCTCTACACCGTTAACGTTAGCGGCTGCCGCTAATCCGTCGTTGGTTTGCCATACCCATTTTG ATGAGCGCGGTCTGGGCCATCTGGCTCTGGGGCTGGCGAAGGCCTCAACAGAACCGGTGGCGGTCATTGTCACCTCGGGT ACGGCGGTGGCGAATCTTTATCCTGCGCTAATCGAAGCGGGGTTAACGGGTGAGCGGTTGATATTATTGACCGCTGATCG CCCACCGGAGTTAATCGATTGCGGTGCCAATCAGGCTATCCGCCAGCAGGGGCTGTTTGCCAGCCATCCAACCCTAAGTG TTAATCTCCCCAGACCGACGCCCGATATCTCTGCCCGTTGGTTGGTTTCCACACTCGACAGCGCGATGGCGCAATTGCAA CATGGCGCTTTGCACATTAATTGTCCCTTTGCTGAACCACTGTATGGGGGGGATGAGCAACAGTATGCCGACTGGTCTGC CTCGCTGGGCGATTGGTGGCAGGATTGTCACCCATGGCTGCGTCAAACCTGTTACCCGCCCTCTCTTTATCAACCACTTG CACAGCAAGCTGACTGGTTTTTCTGGCGGCAAAAACGTGGAGTCGTGATTGCCGGGCGGATGGGCGCGGAAGAGGGCCGG CAACTGACTGCATGGGCTGCAATGCTGGGCTGGCCACTGATTGGCGATGTATTGTCACAAACGGGTCAGCCATTGCCTTG TGCTGACTTATGGCTGGCGCACCCACGGGCGCAAGAAACCCTCGCTCAAGCACAGATTGTGTTGCAATTTGGCAGCAGTC TGACCAGTAAGCGCCTTTTGCAATGGCAGACTGCATGTCAGCCACAGGAATACTGGCTGGTGGATAGCGCCCCAGGCCGC CTTGATCCTGCTAATCATCGTGGCCGACGTATTATTTGCCCGGTAGGCGAGTGGTTGAGTCGGCACCCCGCGCAGCGGCG TACACCTTGGGCCACAGAACTGGCGGTGTATTCGGAAAGTGCGCAAGCACAGGTGATCGAGACGCTGTCCGGCCAATTCA GTGAGGCCGCCGTGGCACATCAGCTCGCGGAATTATTACCGGATAACGGCCAGCTATTTGTTGGCAACAGTTTGATTGTC CGGTTGATTGATGCGCTGGGGCAGCTACCCGCAGGCTATCCGGTTTACAGCAATCGGGGGGCCAGTGGTATCGATGGTTT GCTGTCAACCGCCGCCGGTGTACAGCGCGCGACGGCGAAACCGACATTAGCTATCGTCGGTGATTTGTCTGCCTTATATG ACCTTAATGCGCTGGCACTTTTGCGCCAGAGCTCGGCACCGATGGTGCTACTGGTGATCAATAACAATGGGGGGCAGATT TTCTCTTTATTGCCAACCCCAGAGGCCGAGCGCCAGCGTTTCTACTGTATGCCGCAGGATGTGAACTTCGAACACGCAGC GGTTATGTTCAGCTTAGGTTATGCCCGGCCTAATAGCTGGCCTCAGCTACGGGAGCACGTGCATCAATGCTGGCTACGGG GGGGAACCACGCTGATTGAAGTCCAGGTGCCACCAAGTCAGGGGGCAGAAACACTGCAACAGTTAGTACAACAGGTGACA TTAATACCGCAGGTGGCCCCATGA
Upstream 100 bases:
>100_bases TTAACCATAAAGCGGTCACTGCGGATTTTTCAACGGTAACGTTTCTCTTTATCTTAATTATCACGGCCGTAGCGTCTGTT AACTGACTTTTGAGCAAACC
Downstream 100 bases:
>100_bases CGACACTGGCTTGCCAAAAACTGGCCCCTCATCCGGAATCGCCCCGCCATCAACACGCCGGGCCTTGGTTGGTTTGGTTA CATGGTTTGTTGGGCAGCGG
Product: 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase
Products: NA
Alternate protein names: SEPHCHC synthase; Menaquinone biosynthesis protein menD [H]
Number of amino acids: Translated: 567; Mature: 566
Protein sequence:
>567_residues MSTSVFNRRWAALLLEALTRHGVRHICIAPGSRSTPLTLAAAANPSLVCHTHFDERGLGHLALGLAKASTEPVAVIVTSG TAVANLYPALIEAGLTGERLILLTADRPPELIDCGANQAIRQQGLFASHPTLSVNLPRPTPDISARWLVSTLDSAMAQLQ HGALHINCPFAEPLYGGDEQQYADWSASLGDWWQDCHPWLRQTCYPPSLYQPLAQQADWFFWRQKRGVVIAGRMGAEEGR QLTAWAAMLGWPLIGDVLSQTGQPLPCADLWLAHPRAQETLAQAQIVLQFGSSLTSKRLLQWQTACQPQEYWLVDSAPGR LDPANHRGRRIICPVGEWLSRHPAQRRTPWATELAVYSESAQAQVIETLSGQFSEAAVAHQLAELLPDNGQLFVGNSLIV RLIDALGQLPAGYPVYSNRGASGIDGLLSTAAGVQRATAKPTLAIVGDLSALYDLNALALLRQSSAPMVLLVINNNGGQI FSLLPTPEAERQRFYCMPQDVNFEHAAVMFSLGYARPNSWPQLREHVHQCWLRGGTTLIEVQVPPSQGAETLQQLVQQVT LIPQVAP
Sequences:
>Translated_567_residues MSTSVFNRRWAALLLEALTRHGVRHICIAPGSRSTPLTLAAAANPSLVCHTHFDERGLGHLALGLAKASTEPVAVIVTSG TAVANLYPALIEAGLTGERLILLTADRPPELIDCGANQAIRQQGLFASHPTLSVNLPRPTPDISARWLVSTLDSAMAQLQ HGALHINCPFAEPLYGGDEQQYADWSASLGDWWQDCHPWLRQTCYPPSLYQPLAQQADWFFWRQKRGVVIAGRMGAEEGR QLTAWAAMLGWPLIGDVLSQTGQPLPCADLWLAHPRAQETLAQAQIVLQFGSSLTSKRLLQWQTACQPQEYWLVDSAPGR LDPANHRGRRIICPVGEWLSRHPAQRRTPWATELAVYSESAQAQVIETLSGQFSEAAVAHQLAELLPDNGQLFVGNSLIV RLIDALGQLPAGYPVYSNRGASGIDGLLSTAAGVQRATAKPTLAIVGDLSALYDLNALALLRQSSAPMVLLVINNNGGQI FSLLPTPEAERQRFYCMPQDVNFEHAAVMFSLGYARPNSWPQLREHVHQCWLRGGTTLIEVQVPPSQGAETLQQLVQQVT LIPQVAP >Mature_566_residues STSVFNRRWAALLLEALTRHGVRHICIAPGSRSTPLTLAAAANPSLVCHTHFDERGLGHLALGLAKASTEPVAVIVTSGT AVANLYPALIEAGLTGERLILLTADRPPELIDCGANQAIRQQGLFASHPTLSVNLPRPTPDISARWLVSTLDSAMAQLQH GALHINCPFAEPLYGGDEQQYADWSASLGDWWQDCHPWLRQTCYPPSLYQPLAQQADWFFWRQKRGVVIAGRMGAEEGRQ LTAWAAMLGWPLIGDVLSQTGQPLPCADLWLAHPRAQETLAQAQIVLQFGSSLTSKRLLQWQTACQPQEYWLVDSAPGRL DPANHRGRRIICPVGEWLSRHPAQRRTPWATELAVYSESAQAQVIETLSGQFSEAAVAHQLAELLPDNGQLFVGNSLIVR LIDALGQLPAGYPVYSNRGASGIDGLLSTAAGVQRATAKPTLAIVGDLSALYDLNALALLRQSSAPMVLLVINNNGGQIF SLLPTPEAERQRFYCMPQDVNFEHAAVMFSLGYARPNSWPQLREHVHQCWLRGGTTLIEVQVPPSQGAETLQQLVQQVTL IPQVAP
Specific function: Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-ca
COG id: COG1165
COG function: function code H; 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the TPP enzyme family. MenD subfamily [H]
Homologues:
Organism=Escherichia coli, GI1788599, Length=560, Percent_Identity=70.1785714285714, Blast_Score=800, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004433 - InterPro: IPR012001 - InterPro: IPR011766 [H]
Pfam domain/function: PF02775 TPP_enzyme_C; PF02776 TPP_enzyme_N [H]
EC number: =2.2.1.9 [H]
Molecular weight: Translated: 61872; Mature: 61741
Theoretical pI: Translated: 6.71; Mature: 6.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTSVFNRRWAALLLEALTRHGVRHICIAPGSRSTPLTLAAAANPSLVCHTHFDERGLGH CCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEEECCCCCEEEEECCCCCCCCH LALGLAKASTEPVAVIVTSGTAVANLYPALIEAGLTGERLILLTADRPPELIDCGANQAI HHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHEECCCCHHH RQQGLFASHPTLSVNLPRPTPDISARWLVSTLDSAMAQLQHGALHINCPFAEPLYGGDEQ HHCCCEECCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCH QYADWSASLGDWWQDCHPWLRQTCYPPSLYQPLAQQADWFFWRQKRGVVIAGRMGAEEGR HHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCHHEEEECCCCEEEEECCCCCCCC QLTAWAAMLGWPLIGDVLSQTGQPLPCADLWLAHPRAQETLAQAQIVLQFGSSLTSKRLL HHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHCHHHHHHHH QWQTACQPQEYWLVDSAPGRLDPANHRGRRIICPVGEWLSRHPAQRRTPWATELAVYSES HHHHCCCCCCEEEEECCCCCCCCCCCCCCEEEECHHHHHHCCCCCCCCCCHHHHEEECCC AQAQVIETLSGQFSEAAVAHQLAELLPDNGQLFVGNSLIVRLIDALGQLPAGYPVYSNRG HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHCCCCCCCCCCCCC ASGIDGLLSTAAGVQRATAKPTLAIVGDLSALYDLNALALLRQSSAPMVLLVINNNGGQI CCHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHCCCCCEEEEEEECCCCEE FSLLPTPEAERQRFYCMPQDVNFEHAAVMFSLGYARPNSWPQLREHVHQCWLRGGTTLIE EEECCCCCHHCCEEEECCCCCCCHHHEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEE VQVPPSQGAETLQQLVQQVTLIPQVAP EECCCCCCHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure STSVFNRRWAALLLEALTRHGVRHICIAPGSRSTPLTLAAAANPSLVCHTHFDERGLGH CCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEEECCCCCEEEEECCCCCCCCH LALGLAKASTEPVAVIVTSGTAVANLYPALIEAGLTGERLILLTADRPPELIDCGANQAI HHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHEECCCCHHH RQQGLFASHPTLSVNLPRPTPDISARWLVSTLDSAMAQLQHGALHINCPFAEPLYGGDEQ HHCCCEECCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCH QYADWSASLGDWWQDCHPWLRQTCYPPSLYQPLAQQADWFFWRQKRGVVIAGRMGAEEGR HHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCHHEEEECCCCEEEEECCCCCCCC QLTAWAAMLGWPLIGDVLSQTGQPLPCADLWLAHPRAQETLAQAQIVLQFGSSLTSKRLL HHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHCHHHHHHHH QWQTACQPQEYWLVDSAPGRLDPANHRGRRIICPVGEWLSRHPAQRRTPWATELAVYSES HHHHCCCCCCEEEEECCCCCCCCCCCCCCEEEECHHHHHHCCCCCCCCCCHHHHEEECCC AQAQVIETLSGQFSEAAVAHQLAELLPDNGQLFVGNSLIVRLIDALGQLPAGYPVYSNRG HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHCCCCCCCCCCCCC ASGIDGLLSTAAGVQRATAKPTLAIVGDLSALYDLNALALLRQSSAPMVLLVINNNGGQI CCHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHCCCCCEEEEEEECCCCEE FSLLPTPEAERQRFYCMPQDVNFEHAAVMFSLGYARPNSWPQLREHVHQCWLRGGTTLIE EEECCCCCHHCCEEEECCCCCCCHHHEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEE VQVPPSQGAETLQQLVQQVTLIPQVAP EECCCCCCHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA