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The map label for this gene is ccmH [H]

Identifier: 170023744

GI number: 170023744

Start: 1664052

End: 1664564

Strand: Direct

Name: ccmH [H]

Synonym: YPK_1503

Alternate gene names: 170023744

Gene position: 1664052-1664564 (Clockwise)

Preceding gene: 170023743

Following gene: 170023745

Centisome position: 35.49

GC content: 46.39

Gene sequence:

>513_bases
ATGAGGTTACTCAGTCTGCTACTGGGTCTGATATTGAGCTGGGGAGTATTGGCGACCATCGATACTTATCGCTTCAGTTC
GGTAGAACAAGAGCAGCAATACCGTGCACTGACCGAGCAACTGCGTTGCCCAAAATGCCAGAACAACAGTATTGCTGACT
CGAATGCCACCATTGCGGCCGATATGCGCGCTAAAGTGTATGAACTGATGCAACAAGGTTATTCCAAACAGCAGATTGTT
GATTATATGGTGGCCCGCTACGGTAACTTTGTGACCTATGAACCACCAGTAACGGCTGCGACGATAATTCTATGGGCAGG
GCCGCTACTGTTTGTGTTAATTGGGGCGGCGATAGTGGTGTTACGCGCCCGGCGGCGAGTCGAGAAAGAGCCGCCACTTT
CACAACAAGAACAGCAACGGTTACAAAGCTTATTGGCTGAAAATAGCGTATTACAAAATAACGCATTACAAAATAATAAG
TTACAAGAAGAATCTGACAGGAAAAAAACATAA

Upstream 100 bases:

>100_bases
ATGGTCAAGGGGTTATCCGTTACCGCCATGCTGGTGATCTTAATGATCGGGTCTGGCAGCAGGAAATCTTACCGCTGTAT
AAAAAGTACCAGGGGGGCGC

Downstream 100 bases:

>100_bases
TGGCTTTTTGGCTGATAGTCATCATTTCGTTGGCGGTTGCAGGGGCCTTATTGGTCATTCCGGTCATCCGAAAAAATGAA
AATAAGCGGGTTACCACCAG

Product: cytochrome C biogenesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 170; Mature: 170

Protein sequence:

>170_residues
MRLLSLLLGLILSWGVLATIDTYRFSSVEQEQQYRALTEQLRCPKCQNNSIADSNATIAADMRAKVYELMQQGYSKQQIV
DYMVARYGNFVTYEPPVTAATIILWAGPLLFVLIGAAIVVLRARRRVEKEPPLSQQEQQRLQSLLAENSVLQNNALQNNK
LQEESDRKKT

Sequences:

>Translated_170_residues
MRLLSLLLGLILSWGVLATIDTYRFSSVEQEQQYRALTEQLRCPKCQNNSIADSNATIAADMRAKVYELMQQGYSKQQIV
DYMVARYGNFVTYEPPVTAATIILWAGPLLFVLIGAAIVVLRARRRVEKEPPLSQQEQQRLQSLLAENSVLQNNALQNNK
LQEESDRKKT
>Mature_170_residues
MRLLSLLLGLILSWGVLATIDTYRFSSVEQEQQYRALTEQLRCPKCQNNSIADSNATIAADMRAKVYELMQQGYSKQQIV
DYMVARYGNFVTYEPPVTAATIILWAGPLLFVLIGAAIVVLRARRRVEKEPPLSQQEQQRLQSLLAENSVLQNNALQNNK
LQEESDRKKT

Specific function: May be required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG3088

COG function: function code O; Uncharacterized protein involved in biosynthesis of c-type cytochromes

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 TPR repeats [H]

Homologues:

Organism=Escherichia coli, GI1788522, Length=119, Percent_Identity=61.3445378151261, Blast_Score=159, Evalue=9e-41,
Organism=Escherichia coli, GI1790512, Length=82, Percent_Identity=42.6829268292683, Blast_Score=79, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005616
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: PF03918 CcmH [H]

EC number: NA

Molecular weight: Translated: 19318; Mature: 19318

Theoretical pI: Translated: 9.05; Mature: 9.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLLSLLLGLILSWGVLATIDTYRFSSVEQEQQYRALTEQLRCPKCQNNSIADSNATIAA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHH
DMRAKVYELMQQGYSKQQIVDYMVARYGNFVTYEPPVTAATIILWAGPLLFVLIGAAIVV
HHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHH
LRARRRVEKEPPLSQQEQQRLQSLLAENSVLQNNALQNNKLQEESDRKKT
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCC
>Mature Secondary Structure
MRLLSLLLGLILSWGVLATIDTYRFSSVEQEQQYRALTEQLRCPKCQNNSIADSNATIAA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHH
DMRAKVYELMQQGYSKQQIVDYMVARYGNFVTYEPPVTAATIILWAGPLLFVLIGAAIVV
HHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHH
LRARRRVEKEPPLSQQEQQRLQSLLAENSVLQNNALQNNKLQEESDRKKT
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503; 7635817 [H]