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The map label for this gene is allS [H]

Identifier: 170023683

GI number: 170023683

Start: 1593803

End: 1594681

Strand: Reverse

Name: allS [H]

Synonym: YPK_1442

Alternate gene names: 170023683

Gene position: 1594681-1593803 (Counterclockwise)

Preceding gene: 170023686

Following gene: 170023682

Centisome position: 34.01

GC content: 51.54

Gene sequence:

>879_bases
ATGCATTATTCCCCTGAGGCATTGATTGCTTTTGTTGAAGCCGCGGCCCTTGGATCTTTCTCAGCCGCCGCCCGTAAGCT
GCGTAAAAGCCAATCAACCATCAGCACTGCTATCGCCAATCTGGAAGCGGACCTTGGCTTAACCCTATTTGACCGACAAG
CCCGTCAGCCAGTGTTAACCGATCACGGTCGCCGTGTGTTGGCTCACGTACAAGAGATTTTGGCCGCCGGTGAGCGCCTG
ACTGATTTATCTATCCGTCTGGCGGGTCAAGTTGAGACGCGATTAACATTCGTTCTATCTGATACCTATTATCAGCCAGC
ACATCATGAAAATCTGCTACGCCGCTTTGAGCAGCGCTACCCTGATGTCGAATTCGAATGTCTGGTTGCCGAAGATGAAG
ATGTCATTGACCTCTTGCAACTCAAACGCGCCCATATCGGTGTAGTGGAAATGCAAGAACGCTATCCCCCGGATATTGCG
GCCACTCGGCTGGCCGCACAGACTGAAATGGCGGTGTTTGTGCTACGCGGTCATCCTCTGACCAGACTTCCTCACCTGAA
AAATGAGCAACTGGCCACCACACGTCAGCTGTGTCTGAACACCTATAACCGCACTGATCATAATCAATCTCAAGGTTTGA
CATGGTCCGCCCCCAGCTATTTGATGTTGCTAGAGATGGCTGAGCAAGGCTTTGGCTGGGCGATCTTACCCCGTTGGCTG
GTAGAACAATTCGGGCGTGAAAAACTGGTGACTTTGCCGGTGCAAGGCTGGCCAAAAATGATCTCCATTGATGCGGTTTG
GTCGAAAAAAAGCCCACCGGGGCCTGCTGGCTATTGGCTATTAGATCAATTAACGGAAGGCACTAACTCACCACACTGA

Upstream 100 bases:

>100_bases
AACACCTACTTAAATAAGTTAATAGCACATTGTTGCAGGTGATTATCATCGCTTTTTAAGATAGATTAAAAATAGAATCC
ATCGATAAAGTAGATGCATC

Downstream 100 bases:

>100_bases
TGACGATAACGCGCTGATTCGCACTGTGATCGCCACAACTTACACAACCGATGAAAACGCATACACTACAATAGCGCTTA
TTTTTATTATTGCTGCTATC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 292; Mature: 292

Protein sequence:

>292_residues
MHYSPEALIAFVEAAALGSFSAAARKLRKSQSTISTAIANLEADLGLTLFDRQARQPVLTDHGRRVLAHVQEILAAGERL
TDLSIRLAGQVETRLTFVLSDTYYQPAHHENLLRRFEQRYPDVEFECLVAEDEDVIDLLQLKRAHIGVVEMQERYPPDIA
ATRLAAQTEMAVFVLRGHPLTRLPHLKNEQLATTRQLCLNTYNRTDHNQSQGLTWSAPSYLMLLEMAEQGFGWAILPRWL
VEQFGREKLVTLPVQGWPKMISIDAVWSKKSPPGPAGYWLLDQLTEGTNSPH

Sequences:

>Translated_292_residues
MHYSPEALIAFVEAAALGSFSAAARKLRKSQSTISTAIANLEADLGLTLFDRQARQPVLTDHGRRVLAHVQEILAAGERL
TDLSIRLAGQVETRLTFVLSDTYYQPAHHENLLRRFEQRYPDVEFECLVAEDEDVIDLLQLKRAHIGVVEMQERYPPDIA
ATRLAAQTEMAVFVLRGHPLTRLPHLKNEQLATTRQLCLNTYNRTDHNQSQGLTWSAPSYLMLLEMAEQGFGWAILPRWL
VEQFGREKLVTLPVQGWPKMISIDAVWSKKSPPGPAGYWLLDQLTEGTNSPH
>Mature_292_residues
MHYSPEALIAFVEAAALGSFSAAARKLRKSQSTISTAIANLEADLGLTLFDRQARQPVLTDHGRRVLAHVQEILAAGERL
TDLSIRLAGQVETRLTFVLSDTYYQPAHHENLLRRFEQRYPDVEFECLVAEDEDVIDLLQLKRAHIGVVEMQERYPPDIA
ATRLAAQTEMAVFVLRGHPLTRLPHLKNEQLATTRQLCLNTYNRTDHNQSQGLTWSAPSYLMLLEMAEQGFGWAILPRWL
VEQFGREKLVTLPVQGWPKMISIDAVWSKKSPPGPAGYWLLDQLTEGTNSPH

Specific function: Positive regulator essential for the expression of allD operon. Binds to the allD promoter [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786713, Length=123, Percent_Identity=33.3333333333333, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1788481, Length=266, Percent_Identity=26.3157894736842, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1786508, Length=146, Percent_Identity=27.3972602739726, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1786401, Length=152, Percent_Identity=30.2631578947368, Blast_Score=61, Evalue=8e-11,
Organism=Escherichia coli, GI157672245, Length=189, Percent_Identity=29.1005291005291, Blast_Score=61, Evalue=1e-10,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32974; Mature: 32974

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHYSPEALIAFVEAAALGSFSAAARKLRKSQSTISTAIANLEADLGLTLFDRQARQPVLT
CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHCCCCCHH
DHGRRVLAHVQEILAAGERLTDLSIRLAGQVETRLTFVLSDTYYQPAHHENLLRRFEQRY
HHHHHHHHHHHHHHHCCCCEEEEEEEEECCCEEEEEEEEECCCCCCCHHHHHHHHHHHHC
PDVEFECLVAEDEDVIDLLQLKRAHIGVVEMQERYPPDIAATRLAAQTEMAVFVLRGHPL
CCCCEEEEEECCCHHHHHHHHHHHHCCCEEHHHHCCCCHHHHHHHHHHHEEEEEEECCCC
TRLPHLKNEQLATTRQLCLNTYNRTDHNQSQGLTWSAPSYLMLLEMAEQGFGWAILPRWL
CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEECCCHHHHHHHHHHCCCCEEHHHHHH
VEQFGREKLVTLPVQGWPKMISIDAVWSKKSPPGPAGYWLLDQLTEGTNSPH
HHHCCCCCEEEEECCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MHYSPEALIAFVEAAALGSFSAAARKLRKSQSTISTAIANLEADLGLTLFDRQARQPVLT
CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHCCCCCHH
DHGRRVLAHVQEILAAGERLTDLSIRLAGQVETRLTFVLSDTYYQPAHHENLLRRFEQRY
HHHHHHHHHHHHHHHCCCCEEEEEEEEECCCEEEEEEEEECCCCCCCHHHHHHHHHHHHC
PDVEFECLVAEDEDVIDLLQLKRAHIGVVEMQERYPPDIAATRLAAQTEMAVFVLRGHPL
CCCCEEEEEECCCHHHHHHHHHHHHCCCEEHHHHCCCCHHHHHHHHHHHEEEEEEECCCC
TRLPHLKNEQLATTRQLCLNTYNRTDHNQSQGLTWSAPSYLMLLEMAEQGFGWAILPRWL
CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEECCCHHHHHHHHHHCCCCEEHHHHHH
VEQFGREKLVTLPVQGWPKMISIDAVWSKKSPPGPAGYWLLDQLTEGTNSPH
HHHCCCCCEEEEECCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA