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The map label for this gene is rcsF [H]

Identifier: 170023342

GI number: 170023342

Start: 1231977

End: 1232384

Strand: Reverse

Name: rcsF [H]

Synonym: YPK_1093

Alternate gene names: 170023342

Gene position: 1232384-1231977 (Counterclockwise)

Preceding gene: 170023343

Following gene: 170023341

Centisome position: 26.28

GC content: 48.04

Gene sequence:

>408_bases
ATGCGTGCGTTACCTCTGTGTCTGTTAGCTCTATCGCTAACTGGATGTACCCTGCTTCCATCAAAGCCATCCACCACAGA
TAATCCGATTAAGCAACCACCTCCGGTTATCGAACGCAGCCCCACGGCAGCCCCACGGCCTGCACCGGTAAAGCTTTATA
AAAGTGCCGAAGAACTTGTTGGTAAGCCTTTTCGCGATCTAGGTGAAGTGTCTGGTGAATCTTGCCAATCAACCGTTCAG
GATTCTCCACCCAGTATTTCAACCGCTCGTAAGAGAATGCAAATTCGTGCATCTTATATGAAAGCAAATGCCGTCTTACT
GCATGAATGTGAAATACAAAGGGGTGTCCCTGGCTGCTATCAACAAGCGGTGTGTCAGGGTTCAGCACTGAACGTTTCAT
CTAAATGA

Upstream 100 bases:

>100_bases
TATTGAATATATCGACAAGACGGGCTATAGCCCGTCTTGTTATTTGAATAATAGATTGCTTCAATAGCACAACTTAAATG
AATAAGGCTGAGGAATTTTT

Downstream 100 bases:

>100_bases
GTACATTCTCTTTTAATCAGATCGGCGTGATCCGTTCACCGTATAAAGAAAAGTTTGCGGTACCACGGCAACCCGGTTTG
GTTGAGGATGGTGGTGGCGA

Product: outer membrane lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 135; Mature: 135

Protein sequence:

>135_residues
MRALPLCLLALSLTGCTLLPSKPSTTDNPIKQPPPVIERSPTAAPRPAPVKLYKSAEELVGKPFRDLGEVSGESCQSTVQ
DSPPSISTARKRMQIRASYMKANAVLLHECEIQRGVPGCYQQAVCQGSALNVSSK

Sequences:

>Translated_135_residues
MRALPLCLLALSLTGCTLLPSKPSTTDNPIKQPPPVIERSPTAAPRPAPVKLYKSAEELVGKPFRDLGEVSGESCQSTVQ
DSPPSISTARKRMQIRASYMKANAVLLHECEIQRGVPGCYQQAVCQGSALNVSSK
>Mature_135_residues
MRALPLCLLALSLTGCTLLPSKPSTTDNPIKQPPPVIERSPTAAPRPAPVKLYKSAEELVGKPFRDLGEVSGESCQSTVQ
DSPPSISTARKRMQIRASYMKANAVLLHECEIQRGVPGCYQQAVCQGSALNVSSK

Specific function: Essential component of the Rcs signaling system to promote transcription of the genes for colanic acid capsule synthesis. Together with rcsC, they probably promote the phosphorylation of rcsB [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786394, Length=137, Percent_Identity=63.5036496350365, Blast_Score=172, Evalue=5e-45,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 14461; Mature: 14461

Theoretical pI: Translated: 9.10; Mature: 9.10

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
4.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
6.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRALPLCLLALSLTGCTLLPSKPSTTDNPIKQPPPVIERSPTAAPRPAPVKLYKSAEELV
CCCHHHHHHHHHHHCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
GKPFRDLGEVSGESCQSTVQDSPPSISTARKRMQIRASYMKANAVLLHECEIQRGVPGCY
CCCHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECHHHCCCCHHH
QQAVCQGSALNVSSK
HHHHHCCCCCCCCCC
>Mature Secondary Structure
MRALPLCLLALSLTGCTLLPSKPSTTDNPIKQPPPVIERSPTAAPRPAPVKLYKSAEELV
CCCHHHHHHHHHHHCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
GKPFRDLGEVSGESCQSTVQDSPPSISTARKRMQIRASYMKANAVLLHECEIQRGVPGCY
CCCHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECHHHCCCCHHH
QQAVCQGSALNVSSK
HHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Stimulates colanic acid capsule synthesis [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]