| Definition | Yersinia pseudotuberculosis YPIII chromosome, complete genome. |
|---|---|
| Accession | NC_010465 |
| Length | 4,689,441 |
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The map label for this gene is glnD [H]
Identifier: 170023313
GI number: 170023313
Start: 1200168
End: 1202906
Strand: Reverse
Name: glnD [H]
Synonym: YPK_1064
Alternate gene names: 170023313
Gene position: 1202906-1200168 (Counterclockwise)
Preceding gene: 170023314
Following gene: 170023312
Centisome position: 25.65
GC content: 49.25
Gene sequence:
>2739_bases ATGACAAGCCGGCACCGCCGGCTTTTTTATGGGCTGCGTTCCTCATCGGGTAAACATATGTCTGACAATCACACCGAACA CTCCCTATCGCTGACGCTCACTCCCACTATTTCTGAGCAGCCCGCACTTCCCAGCACTTATCTTGATAGCGACATCCATT GCCCGATACTGAAGCAACGGCTTGACGCTTTCCAACGCTGGCAGGCAGAGGCATTTAATAGTGGCACCTCTGCCGAGGTA TTAATTGCGGCACGCAGTGATTATATCGATCATCTGTTACAGCGGTTGTGGACATTCTATGGTTTTGACAAGGTGCCAGA AACAGCTCTGGTTGCGGTCGGTGGCTATGGGCGCGGCGAACTGCATCCATTATCAGATATTGATGTGTTAGTACTGAGTA AGCAGCGTCTAAATGATGAACAGGCGCAACGGGTTGGCCAACTCATTACCTTATTGTGGGATTTGAAGCTGGAAGTCGGT CATAGTGTGCGCACACTGGAAGAGTGCTTGCTGGAAGGCCTCGCAGATTTAACCATAGCCACCAATATGATTGAGTCACG GTTGATTTGCGGTGATGTCGCCCTTTTTTTACAGATGCAAAAACATATTTTCAGTGACAGTTTCTGGCCCTCCCCTCAAT TTTTCCATGCAAAAGTTGTTGAACAGCAAGAGCGTCATAAACGCTATCACGGCACCAGCTATAATCTGGAACCCGATATC AAAAGTAGCCCTGGTGGATTACGGGATATCCACACATTACTCTGGGTTGCCCGTCGCCATTTCGGTGCGACATCGTTAAG TGAAATGGTTGATTTTGGGTTTCTCACCAACGCCGAGCGTAATGAACTGAATGAAAGCCAGAGTTTTTTATGGCGTATCC GTTTTGCGCTGCACCTGGTATTGACTCGCTACGATAACCGCCTGCTGTTTGACCGCCAACTGAGCGTTGCTCAACTTTTA CGCTACGAAGGTGAAGGCAATGAGCCCGTTGAACATATGATGAAAGATTTCTATCGTATGACAAGGCGTGTCAGTGAACT GAACAATATGCTGCTGCAATTGTTTGATGAAGCCATACTGGCATTAGATGCGAATGAAAAACCGCGTCCACTTGACGAAG AGTTTCAACTACGGGGAGATTTAATTGATCTCCGTGATGAGAACCTATTTGTTCGTCAGCCTGAAGCGATCATGCGGATG TTCTATCTGATGGTGCGCAATCAGGATATTAAAGGTATTTACTCCACTACCGTCCGGCGTTTGCGCCATGCCCGTCGTCA TCTGAAAGCCCCTTTATGTCACATTCCTGAAGCTCGTAAGCTGTTCATGGCCATTTTGCGCCACCCCGGTGCCGTTTCAC GTGCGTTGCTGCCCATGCATCGTCACAGTGTTTTATGGGCCTATATGCCGCAATGGGGCAGTATTGTTGGCCAAATGCAA TTTGATCTATTTCATGCTTATACGGTGGATGAACACACCATCCGTGTTTTGCTAAAAATTGAAAGCTTCGCGGATGAAGA TACCCGGCCACGTCATCCACTCTGCGTCGAACTCTACCCTCGCCTGCCTCAGCCTGAATTACTGCTGCTGGCCGCCCTGT TTCATGATATTGCCAAAGGGCGTGGCGGTGATCATTCAATACTGGGTGCCCACGACGCGGTGGAGTTTGCTGAACAGCAT GGGCTTAATTCACGCGAATCCCAATTAGTCGCTTGGTTAGTTCGCTGCCATTTATTGATGTCAGTGACCGCCCAACGTAG GGATATTCAGGACCCGGCCGTTATTCAGCAATTTTCTGCCGAAGTGCAAAGTGAAACGCGCCTGCGCTATCTGGTCAGCC TGACCGTGGCAGATATTTGCGCCACCAATGAAAATCTATGGAATAGCTGGAAACAGAGCCTGTTACGCGAACTGTACTTT GCGACCGAAAAACAGCTACGCCGCGGAATGCAAAATAGCCCTGATTTACGTGAGCGTGTACGCCACCACCGCCTGCAAGC GTTAGCTCTACTGCGGATGGATAATATTGATGAAGAGGCACTGCATCGTATCTGGAGCCGTTGCCGAGCGGATTACTTCC TACGCCACTCGCCGAATCAACTTGCCTGGCACGCCCGCCATTTGCTGGAGCACGACTCAACCAAACCGCTAGTCTTAGTC AGCCGTCAGGCTACCCGTGGTGGGACTGAAATATTTATCTGGAGCCCTGACCGCCCATCACTCTTTGCCGCTGTTGTTGG GGAGCTTGATCGCCGCAACTTGAGCGTCCATGACGCACAAATTTTCACCAATCGTGATGGTATGGCGATGGATACCTTTA TTGTATTGGAGCCAGATGGCAGCCCGTTGGCACAGGATAGGCATCCAATAATCAGCCATGCATTACAGCAAGCGATAAAC CGGTCAGATTACCAACACCCGCCGCGGGTTAGGCGATTATCACCTAAATTACGGCATTTCAGCGTGCCAACCGAAGCTAA CTTTTTACCAACCCATAACGAGCGGCGTACTTATCTGGAATTAATTGCGTTAGATCAACCAGGGTTACTGGCACGTGTTG GCAAAATTTTTGCTGATTTAGGGTTATCACTGCACAGTGCACGTATCACCACCATCGGCGAGCGAGTAGAGGATTTATTT GTTTTAGCAGATAAAGATCGTCGAGCACTGAGCCTTGAAACCCGTCGTGAATTAGCACAACGATTGGCAGATACTCTCAA TCCAAACGATAAACTGTGA
Upstream 100 bases:
>100_bases CGCAGTATGAGCATACTATTGTGGTAACCGATAACGGCTGCGAAATAATGACGTTGCGTAAGGATGACACTATCCCCAAC ATCATAACGCACGAGTAATA
Downstream 100 bases:
>100_bases TACAAATATCTTTTTAGTAATTAATATTTATTAAAATTAATTTTTTACTATTCGTTTTTATCACGACTCATTTTATTACA ACCTATACCCCAGCGATTAG
Product: PII uridylyl-transferase
Products: NA
Alternate protein names: PII uridylyl-transferase; UTase; Uridylyl-removing enzyme [H]
Number of amino acids: Translated: 912; Mature: 911
Protein sequence:
>912_residues MTSRHRRLFYGLRSSSGKHMSDNHTEHSLSLTLTPTISEQPALPSTYLDSDIHCPILKQRLDAFQRWQAEAFNSGTSAEV LIAARSDYIDHLLQRLWTFYGFDKVPETALVAVGGYGRGELHPLSDIDVLVLSKQRLNDEQAQRVGQLITLLWDLKLEVG HSVRTLEECLLEGLADLTIATNMIESRLICGDVALFLQMQKHIFSDSFWPSPQFFHAKVVEQQERHKRYHGTSYNLEPDI KSSPGGLRDIHTLLWVARRHFGATSLSEMVDFGFLTNAERNELNESQSFLWRIRFALHLVLTRYDNRLLFDRQLSVAQLL RYEGEGNEPVEHMMKDFYRMTRRVSELNNMLLQLFDEAILALDANEKPRPLDEEFQLRGDLIDLRDENLFVRQPEAIMRM FYLMVRNQDIKGIYSTTVRRLRHARRHLKAPLCHIPEARKLFMAILRHPGAVSRALLPMHRHSVLWAYMPQWGSIVGQMQ FDLFHAYTVDEHTIRVLLKIESFADEDTRPRHPLCVELYPRLPQPELLLLAALFHDIAKGRGGDHSILGAHDAVEFAEQH GLNSRESQLVAWLVRCHLLMSVTAQRRDIQDPAVIQQFSAEVQSETRLRYLVSLTVADICATNENLWNSWKQSLLRELYF ATEKQLRRGMQNSPDLRERVRHHRLQALALLRMDNIDEEALHRIWSRCRADYFLRHSPNQLAWHARHLLEHDSTKPLVLV SRQATRGGTEIFIWSPDRPSLFAAVVGELDRRNLSVHDAQIFTNRDGMAMDTFIVLEPDGSPLAQDRHPIISHALQQAIN RSDYQHPPRVRRLSPKLRHFSVPTEANFLPTHNERRTYLELIALDQPGLLARVGKIFADLGLSLHSARITTIGERVEDLF VLADKDRRALSLETRRELAQRLADTLNPNDKL
Sequences:
>Translated_912_residues MTSRHRRLFYGLRSSSGKHMSDNHTEHSLSLTLTPTISEQPALPSTYLDSDIHCPILKQRLDAFQRWQAEAFNSGTSAEV LIAARSDYIDHLLQRLWTFYGFDKVPETALVAVGGYGRGELHPLSDIDVLVLSKQRLNDEQAQRVGQLITLLWDLKLEVG HSVRTLEECLLEGLADLTIATNMIESRLICGDVALFLQMQKHIFSDSFWPSPQFFHAKVVEQQERHKRYHGTSYNLEPDI KSSPGGLRDIHTLLWVARRHFGATSLSEMVDFGFLTNAERNELNESQSFLWRIRFALHLVLTRYDNRLLFDRQLSVAQLL RYEGEGNEPVEHMMKDFYRMTRRVSELNNMLLQLFDEAILALDANEKPRPLDEEFQLRGDLIDLRDENLFVRQPEAIMRM FYLMVRNQDIKGIYSTTVRRLRHARRHLKAPLCHIPEARKLFMAILRHPGAVSRALLPMHRHSVLWAYMPQWGSIVGQMQ FDLFHAYTVDEHTIRVLLKIESFADEDTRPRHPLCVELYPRLPQPELLLLAALFHDIAKGRGGDHSILGAHDAVEFAEQH GLNSRESQLVAWLVRCHLLMSVTAQRRDIQDPAVIQQFSAEVQSETRLRYLVSLTVADICATNENLWNSWKQSLLRELYF ATEKQLRRGMQNSPDLRERVRHHRLQALALLRMDNIDEEALHRIWSRCRADYFLRHSPNQLAWHARHLLEHDSTKPLVLV SRQATRGGTEIFIWSPDRPSLFAAVVGELDRRNLSVHDAQIFTNRDGMAMDTFIVLEPDGSPLAQDRHPIISHALQQAIN RSDYQHPPRVRRLSPKLRHFSVPTEANFLPTHNERRTYLELIALDQPGLLARVGKIFADLGLSLHSARITTIGERVEDLF VLADKDRRALSLETRRELAQRLADTLNPNDKL >Mature_911_residues TSRHRRLFYGLRSSSGKHMSDNHTEHSLSLTLTPTISEQPALPSTYLDSDIHCPILKQRLDAFQRWQAEAFNSGTSAEVL IAARSDYIDHLLQRLWTFYGFDKVPETALVAVGGYGRGELHPLSDIDVLVLSKQRLNDEQAQRVGQLITLLWDLKLEVGH SVRTLEECLLEGLADLTIATNMIESRLICGDVALFLQMQKHIFSDSFWPSPQFFHAKVVEQQERHKRYHGTSYNLEPDIK SSPGGLRDIHTLLWVARRHFGATSLSEMVDFGFLTNAERNELNESQSFLWRIRFALHLVLTRYDNRLLFDRQLSVAQLLR YEGEGNEPVEHMMKDFYRMTRRVSELNNMLLQLFDEAILALDANEKPRPLDEEFQLRGDLIDLRDENLFVRQPEAIMRMF YLMVRNQDIKGIYSTTVRRLRHARRHLKAPLCHIPEARKLFMAILRHPGAVSRALLPMHRHSVLWAYMPQWGSIVGQMQF DLFHAYTVDEHTIRVLLKIESFADEDTRPRHPLCVELYPRLPQPELLLLAALFHDIAKGRGGDHSILGAHDAVEFAEQHG LNSRESQLVAWLVRCHLLMSVTAQRRDIQDPAVIQQFSAEVQSETRLRYLVSLTVADICATNENLWNSWKQSLLRELYFA TEKQLRRGMQNSPDLRERVRHHRLQALALLRMDNIDEEALHRIWSRCRADYFLRHSPNQLAWHARHLLEHDSTKPLVLVS RQATRGGTEIFIWSPDRPSLFAAVVGELDRRNLSVHDAQIFTNRDGMAMDTFIVLEPDGSPLAQDRHPIISHALQQAINR SDYQHPPRVRRLSPKLRHFSVPTEANFLPTHNERRTYLELIALDQPGLLARVGKIFADLGLSLHSARITTIGERVEDLFV LADKDRRALSLETRRELAQRLADTLNPNDKL
Specific function: Modifies, by uridylylation or deuridylylation the PII (glnB) regulatory protein [H]
COG id: COG2844
COG function: function code O; UTP:GlnB (protein PII) uridylyltransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glnD family [H]
Homologues:
Organism=Escherichia coli, GI1786363, Length=880, Percent_Identity=76.4772727272727, Blast_Score=1404, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002912 - InterPro: IPR010043 - InterPro: IPR003607 - InterPro: IPR002934 - InterPro: IPR013546 [H]
Pfam domain/function: PF01842 ACT; PF08335 GlnD_UR_UTase; PF01909 NTP_transf_2 [H]
EC number: =2.7.7.59 [H]
Molecular weight: Translated: 105418; Mature: 105287
Theoretical pI: Translated: 7.52; Mature: 7.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSRHRRLFYGLRSSSGKHMSDNHTEHSLSLTLTPTISEQPALPSTYLDSDIHCPILKQR CCCCCCHHHEEHHCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCHHCCCCCCCHHHHHH LDAFQRWQAEAFNSGTSAEVLIAARSDYIDHLLQRLWTFYGFDKVPETALVAVGGYGRGE HHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCC LHPLSDIDVLVLSKQRLNDEQAQRVGQLITLLWDLKLEVGHSVRTLEECLLEGLADLTIA CCCCCCCCEEEECHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH TNMIESRLICGDVALFLQMQKHIFSDSFWPSPQFFHAKVVEQQERHKRYHGTSYNLEPDI HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCC KSSPGGLRDIHTLLWVARRHFGATSLSEMVDFGFLTNAERNELNESQSFLWRIRFALHLV CCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH LTRYDNRLLFDRQLSVAQLLRYEGEGNEPVEHMMKDFYRMTRRVSELNNMLLQLFDEAIL HHHHCCCEEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ALDANEKPRPLDEEFQLRGDLIDLRDENLFVRQPEAIMRMFYLMVRNQDIKGIYSTTVRR EECCCCCCCCCCHHHHHCCCEEEECCCCEEEECCHHHHHHHHHHHCCCCCCHHHHHHHHH LRHARRHLKAPLCHIPEARKLFMAILRHPGAVSRALLPMHRHSVLWAYMPQWGSIVGQMQ HHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCEEECCCHHHHHHHHH FDLFHAYTVDEHTIRVLLKIESFADEDTRPRHPLCVELYPRLPQPELLLLAALFHDIAKG HHHHEEEECCCHHEEEEEEEHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCC RGGDHSILGAHDAVEFAEQHGLNSRESQLVAWLVRCHLLMSVTAQRRDIQDPAVIQQFSA CCCCCCEECCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH EVQSETRLRYLVSLTVADICATNENLWNSWKQSLLRELYFATEKQLRRGMQNSPDLRERV HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH RHHRLQALALLRMDNIDEEALHRIWSRCRADYFLRHSPNQLAWHARHLLEHDSTKPLVLV HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCEEEE SRQATRGGTEIFIWSPDRPSLFAAVVGELDRRNLSVHDAQIFTNRDGMAMDTFIVLEPDG ECCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEHHEEEECCCCCEEEEEEEECCCC SPLAQDRHPIISHALQQAINRSDYQHPPRVRRLSPKLRHFSVPTEANFLPTHNERRTYLE CCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHHCCCCCCCCCCCCCCCCHHEEE LIALDQPGLLARVGKIFADLGLSLHSARITTIGERVEDLFVLADKDRRALSLETRRELAQ EEECCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHH RLADTLNPNDKL HHHHHCCCCCCC >Mature Secondary Structure TSRHRRLFYGLRSSSGKHMSDNHTEHSLSLTLTPTISEQPALPSTYLDSDIHCPILKQR CCCCCHHHEEHHCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCHHCCCCCCCHHHHHH LDAFQRWQAEAFNSGTSAEVLIAARSDYIDHLLQRLWTFYGFDKVPETALVAVGGYGRGE HHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCC LHPLSDIDVLVLSKQRLNDEQAQRVGQLITLLWDLKLEVGHSVRTLEECLLEGLADLTIA CCCCCCCCEEEECHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH TNMIESRLICGDVALFLQMQKHIFSDSFWPSPQFFHAKVVEQQERHKRYHGTSYNLEPDI HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCC KSSPGGLRDIHTLLWVARRHFGATSLSEMVDFGFLTNAERNELNESQSFLWRIRFALHLV CCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH LTRYDNRLLFDRQLSVAQLLRYEGEGNEPVEHMMKDFYRMTRRVSELNNMLLQLFDEAIL HHHHCCCEEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ALDANEKPRPLDEEFQLRGDLIDLRDENLFVRQPEAIMRMFYLMVRNQDIKGIYSTTVRR EECCCCCCCCCCHHHHHCCCEEEECCCCEEEECCHHHHHHHHHHHCCCCCCHHHHHHHHH LRHARRHLKAPLCHIPEARKLFMAILRHPGAVSRALLPMHRHSVLWAYMPQWGSIVGQMQ HHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCEEECCCHHHHHHHHH FDLFHAYTVDEHTIRVLLKIESFADEDTRPRHPLCVELYPRLPQPELLLLAALFHDIAKG HHHHEEEECCCHHEEEEEEEHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCC RGGDHSILGAHDAVEFAEQHGLNSRESQLVAWLVRCHLLMSVTAQRRDIQDPAVIQQFSA CCCCCCEECCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH EVQSETRLRYLVSLTVADICATNENLWNSWKQSLLRELYFATEKQLRRGMQNSPDLRERV HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH RHHRLQALALLRMDNIDEEALHRIWSRCRADYFLRHSPNQLAWHARHLLEHDSTKPLVLV HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCEEEE SRQATRGGTEIFIWSPDRPSLFAAVVGELDRRNLSVHDAQIFTNRDGMAMDTFIVLEPDG ECCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEHHEEEECCCCCEEEEEEEECCCC SPLAQDRHPIISHALQQAINRSDYQHPPRVRRLSPKLRHFSVPTEANFLPTHNERRTYLE CCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHHCCCCCCCCCCCCCCCCHHEEE LIALDQPGLLARVGKIFADLGLSLHSARITTIGERVEDLFVLADKDRRALSLETRRELAQ EEECCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHH RLADTLNPNDKL HHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA