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The map label for this gene is degT [H]

Identifier: 169824279

GI number: 169824279

Start: 643966

End: 645153

Strand: Direct

Name: degT [H]

Synonym: FMG_0582

Alternate gene names: 169824279

Gene position: 643966-645153 (Clockwise)

Preceding gene: 169824278

Following gene: 169824280

Centisome position: 35.82

GC content: 31.14

Gene sequence:

>1188_bases
ATGAATATACCATTGTTGAATTTGAAAAGACAATATAAAAACATTGAAGAAGAAGTAAATGCAAGTGTTTTAGAATGTTT
CAAAAATGCACAATATATAATGGGTGAAAATGTTAAACAATTTGAAAAAGAAATTGCAGAAAAAATTGGCGTAAAACATG
CGATTACAGTTGGAAACGGAACGGACGCATTGATTATAGCTTTGAAATCTTTGGGAATAAAAGAAGGAGACGAAGTTATA
ACTACTGACTACACTTTCTTTGCAACAGCTGAAGCAATAAGATTTGTAGGAGCTACACCTGTTTTTTGTGATGTTGAATT
AGACACTTACAATATAGATCCTTCTCAAATAGAAGAAAAGATAACAGATAAAACAAAAGCAATTATCTGTGTTCATTTAT
TTGGAAATGCATGCAAAATGGATCAAATAAATGATATTGCAAAAAGACATAATTTGTACGTAATTGAAGATGCTGCGCAA
GCAATTAATTCACAATATAAGGGAAAAAATGTTGGTAATTTAGGAGATGTGGCATGCTTTTCATTCTTCCCAACAAAGAA
TTTGGGATGCTTTGGTGATGGTGGAATGATCACAACTAATGATGATGATTTGGCAACTATTATAAGAGCTTTGAAGGTTC
ATGGCAGTGGCGAAAATGGAATGAAGGCTTACGCTATATTAAATGACGAAGAAGTTGAAGTTGTAGAACAAAATTCAGGT
GATAATACTGTTTACAATCCATTGAAATACTACAATTACTTAATTGGTCACAATTCTAGATTAGACGAAATTCAAGCAGC
TATTTTGAGAATTAAATTAAAACATTTAGATGAATACACTGAAAATAGAAGAAGTATTTCACACAAATACATTGATGCTT
TGAAAAATACTTCTTTGGTGATGCCAACTGAGACTGAAGGCGGAAAGCATGTTTTCCATTTATTCATTTTACAATCTGAA
AACAGAGAAGAAATAGAATCAAAATTAAAAGAAAAGGGAATCGCTACGGGAACTTATTACAAGGTTCCAATGCATTTACA
AAAAGCTTTTAATGATTTAGGATATAAAAAGGGAGATTTCCCTAATGCGGAATATCTTTCAGAAAGAACTTTTGCAATTC
CATTGTTCCCTGAAATGAACGATGAGGAAAGAGAATATATTATTAATTCTATAAAGGAGATAGTATAA

Upstream 100 bases:

>100_bases
ATTAATTTAATTAATGATATAAAAATAATTCTTCAAACATTGAAGATTTTATAAATTATTAACTTGTATGAAATAAGAGA
AGATTAAATGGGGGATTTTA

Downstream 100 bases:

>100_bases
TGGATTTTTTTGCTCATGAGTCTTGCTATATAGATGAAGAGACAAAGATTGGTAAAGGTACTAAAATTTGGCATTTTAGT
CATGTCATGTCAGGATGTAC

Product: pleiotropic regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 395; Mature: 395

Protein sequence:

>395_residues
MNIPLLNLKRQYKNIEEEVNASVLECFKNAQYIMGENVKQFEKEIAEKIGVKHAITVGNGTDALIIALKSLGIKEGDEVI
TTDYTFFATAEAIRFVGATPVFCDVELDTYNIDPSQIEEKITDKTKAIICVHLFGNACKMDQINDIAKRHNLYVIEDAAQ
AINSQYKGKNVGNLGDVACFSFFPTKNLGCFGDGGMITTNDDDLATIIRALKVHGSGENGMKAYAILNDEEVEVVEQNSG
DNTVYNPLKYYNYLIGHNSRLDEIQAAILRIKLKHLDEYTENRRSISHKYIDALKNTSLVMPTETEGGKHVFHLFILQSE
NREEIESKLKEKGIATGTYYKVPMHLQKAFNDLGYKKGDFPNAEYLSERTFAIPLFPEMNDEEREYIINSIKEIV

Sequences:

>Translated_395_residues
MNIPLLNLKRQYKNIEEEVNASVLECFKNAQYIMGENVKQFEKEIAEKIGVKHAITVGNGTDALIIALKSLGIKEGDEVI
TTDYTFFATAEAIRFVGATPVFCDVELDTYNIDPSQIEEKITDKTKAIICVHLFGNACKMDQINDIAKRHNLYVIEDAAQ
AINSQYKGKNVGNLGDVACFSFFPTKNLGCFGDGGMITTNDDDLATIIRALKVHGSGENGMKAYAILNDEEVEVVEQNSG
DNTVYNPLKYYNYLIGHNSRLDEIQAAILRIKLKHLDEYTENRRSISHKYIDALKNTSLVMPTETEGGKHVFHLFILQSE
NREEIESKLKEKGIATGTYYKVPMHLQKAFNDLGYKKGDFPNAEYLSERTFAIPLFPEMNDEEREYIINSIKEIV
>Mature_395_residues
MNIPLLNLKRQYKNIEEEVNASVLECFKNAQYIMGENVKQFEKEIAEKIGVKHAITVGNGTDALIIALKSLGIKEGDEVI
TTDYTFFATAEAIRFVGATPVFCDVELDTYNIDPSQIEEKITDKTKAIICVHLFGNACKMDQINDIAKRHNLYVIEDAAQ
AINSQYKGKNVGNLGDVACFSFFPTKNLGCFGDGGMITTNDDDLATIIRALKVHGSGENGMKAYAILNDEEVEVVEQNSG
DNTVYNPLKYYNYLIGHNSRLDEIQAAILRIKLKHLDEYTENRRSISHKYIDALKNTSLVMPTETEGGKHVFHLFILQSE
NREEIESKLKEKGIATGTYYKVPMHLQKAFNDLGYKKGDFPNAEYLSERTFAIPLFPEMNDEEREYIINSIKEIV

Specific function: This membrane protein may function as a sensor protein and may transfer the signal of environmental stimuli to the regulatory region of target genes to activate or repress transcription of the genes [H]

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=398, Percent_Identity=33.4170854271357, Blast_Score=202, Evalue=3e-53,
Organism=Escherichia coli, GI2367285, Length=364, Percent_Identity=32.4175824175824, Blast_Score=174, Evalue=1e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: NA

Molecular weight: Translated: 44553; Mature: 44553

Theoretical pI: Translated: 4.97; Mature: 4.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIPLLNLKRQYKNIEEEVNASVLECFKNAQYIMGENVKQFEKEIAEKIGVKHAITVGNG
CCCCCCHHHHHHCCHHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHCCCEEEEEECCC
TDALIIALKSLGIKEGDEVITTDYTFFATAEAIRFVGATPVFCDVELDTYNIDPSQIEEK
CCHHHHHHHHCCCCCCCCEEEECEEHHHHHHHHHHHCCCCEEEEEEEEEECCCHHHHHHH
ITDKTKAIICVHLFGNACKMDQINDIAKRHNLYVIEDAAQAINSQYKGKNVGNLGDVACF
HHCCHHEEEEEEECCCCCCCHHHHHHHHHCCEEEEEHHHHHHHHHCCCCCCCCCCCCHHE
SFFPTKNLGCFGDGGMITTNDDDLATIIRALKVHGSGENGMKAYAILNDEEVEVVEQNSG
EECCCCCCCEECCCCEEECCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEECCCC
DNTVYNPLKYYNYLIGHNSRLDEIQAAILRIKLKHLDEYTENRRSISHKYIDALKNTSLV
CCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
MPTETEGGKHVFHLFILQSENREEIESKLKEKGIATGTYYKVPMHLQKAFNDLGYKKGDF
EECCCCCCCEEEEEEEEECCCHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHCCCCCCCC
PNAEYLSERTFAIPLFPEMNDEEREYIINSIKEIV
CCHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHC
>Mature Secondary Structure
MNIPLLNLKRQYKNIEEEVNASVLECFKNAQYIMGENVKQFEKEIAEKIGVKHAITVGNG
CCCCCCHHHHHHCCHHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHCCCEEEEEECCC
TDALIIALKSLGIKEGDEVITTDYTFFATAEAIRFVGATPVFCDVELDTYNIDPSQIEEK
CCHHHHHHHHCCCCCCCCEEEECEEHHHHHHHHHHHCCCCEEEEEEEEEECCCHHHHHHH
ITDKTKAIICVHLFGNACKMDQINDIAKRHNLYVIEDAAQAINSQYKGKNVGNLGDVACF
HHCCHHEEEEEEECCCCCCCHHHHHHHHHCCEEEEEHHHHHHHHHCCCCCCCCCCCCHHE
SFFPTKNLGCFGDGGMITTNDDDLATIIRALKVHGSGENGMKAYAILNDEEVEVVEQNSG
EECCCCCCCEECCCCEEECCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEECCCC
DNTVYNPLKYYNYLIGHNSRLDEIQAAILRIKLKHLDEYTENRRSISHKYIDALKNTSLV
CCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
MPTETEGGKHVFHLFILQSENREEIESKLKEKGIATGTYYKVPMHLQKAFNDLGYKKGDF
EECCCCCCCEEEEEEEEECCCHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHCCCCCCCC
PNAEYLSERTFAIPLFPEMNDEEREYIINSIKEIV
CCHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2104607 [H]