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The map label for this gene is deoC

Identifier: 169824102

GI number: 169824102

Start: 461031

End: 461672

Strand: Direct

Name: deoC

Synonym: FMG_0405

Alternate gene names: 169824102

Gene position: 461031-461672 (Clockwise)

Preceding gene: 169824101

Following gene: 169824103

Centisome position: 25.65

GC content: 35.05

Gene sequence:

>642_bases
ATGGAATTAAATAAATATATCGATCATACTTTATTAAAAGCTGATGCAACATCAGCTGACATCAAAAAAATCTGTGATGA
AGCAATAAAATACGATTTTAAAAGCGTGTGCGTAAATTCTTGCTACACATCTTTGGTTAAAAAATCTTTGGAAAATTCAA
GCGCTTTGGTGTGCACTGTTGTGGGATTTCCACTTGGAGCAATGAGCACAAAATCTAAAGCTTTTGAAGCAAAGACAGCA
ATCGAAGATGGAGCAGATGAAATCGACATGGTTATCAATATCGGCAAATTAAAAGAAAAAGATTATGATTATGTTGAAAA
AGACATCCAAGCAGTAAGAGATGCTACAAAGGGGAAAGTTTTGAAAGTAATCATCGAAACTTGCTTGTTAACTGATGAAG
AAAAGAAAAAAGCTTGCGAAATTTCCGTAAAATGTGGCGCTGATTTCGTGAAGACTTCTACAGGTTTTTCAACAGGTGGA
GCAAAAGTAGAAGATGTAAAACTTATGAAAGATACTGTCGCAGACAAAGCAATGGTAAAAGCAAGTGGTGGAATTCATTC
CAGAGAAGAAGCATTAGCAATGATAGAAAATGGTGCAGATAGAATCGGAGCATCAAGCGGTATTAAAATAGTAGAAGGAT
AA

Upstream 100 bases:

>100_bases
ATTTCTGACTCATTCCATTCAGACAAGCAAACTACTCCAGAAGAAAGACAAACATCATTTACAAAAATGATGGAAATCGC
ATTAGAATTAGGTGAATAAT

Downstream 100 bases:

>100_bases
TTGTAAAGATGCTAAATTTAGCATCTTTTCATTAATTTAAGGAGTAATATGTATTATAGAGATCAACATTGTCACACAGA
ATTTTCATTTGATAGTAAAG

Product: deoxyribose-phosphate aldolase

Products: NA

Alternate protein names: Phosphodeoxyriboaldolase; DERA; Deoxyriboaldolase

Number of amino acids: Translated: 213; Mature: 213

Protein sequence:

>213_residues
MELNKYIDHTLLKADATSADIKKICDEAIKYDFKSVCVNSCYTSLVKKSLENSSALVCTVVGFPLGAMSTKSKAFEAKTA
IEDGADEIDMVINIGKLKEKDYDYVEKDIQAVRDATKGKVLKVIIETCLLTDEEKKKACEISVKCGADFVKTSTGFSTGG
AKVEDVKLMKDTVADKAMVKASGGIHSREEALAMIENGADRIGASSGIKIVEG

Sequences:

>Translated_213_residues
MELNKYIDHTLLKADATSADIKKICDEAIKYDFKSVCVNSCYTSLVKKSLENSSALVCTVVGFPLGAMSTKSKAFEAKTA
IEDGADEIDMVINIGKLKEKDYDYVEKDIQAVRDATKGKVLKVIIETCLLTDEEKKKACEISVKCGADFVKTSTGFSTGG
AKVEDVKLMKDTVADKAMVKASGGIHSREEALAMIENGADRIGASSGIKIVEG
>Mature_213_residues
MELNKYIDHTLLKADATSADIKKICDEAIKYDFKSVCVNSCYTSLVKKSLENSSALVCTVVGFPLGAMSTKSKAFEAKTA
IEDGADEIDMVINIGKLKEKDYDYVEKDIQAVRDATKGKVLKVIIETCLLTDEEKKKACEISVKCGADFVKTSTGFSTGG
AKVEDVKLMKDTVADKAMVKASGGIHSREEALAMIENGADRIGASSGIKIVEG

Specific function: Nucleotide and deoxyribonucleotide catabolism. [C]

COG id: COG0274

COG function: function code F; Deoxyribose-phosphate aldolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the deoC/fbaB aldolase family. DeoC type 1 subfamily

Homologues:

Organism=Homo sapiens, GI116063554, Length=250, Percent_Identity=30.4, Blast_Score=77, Evalue=1e-14,
Organism=Escherichia coli, GI1790841, Length=202, Percent_Identity=31.1881188118812, Blast_Score=75, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17533015, Length=232, Percent_Identity=31.4655172413793, Blast_Score=79, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): DEOC_FINM2 (B0S0N1)

Other databases:

- EMBL:   AP008971
- RefSeq:   YP_001691713.1
- ProteinModelPortal:   B0S0N1
- SMR:   B0S0N1
- GeneID:   6020074
- GenomeReviews:   AP008971_GR
- KEGG:   fma:FMG_0405
- HOGENOM:   HBG636421
- OMA:   GANTPEV
- BioCyc:   FMAG334413:FMG_0405-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00114
- InterPro:   IPR013785
- InterPro:   IPR011343
- InterPro:   IPR002915
- InterPro:   IPR022979
- Gene3D:   G3DSA:3.20.20.70
- PANTHER:   PTHR10889
- PIRSF:   PIRSF001357
- TIGRFAMs:   TIGR00126

Pfam domain/function: PF01791 DeoC

EC number: =4.1.2.4

Molecular weight: Translated: 22908; Mature: 22908

Theoretical pI: Translated: 5.47; Mature: 5.47

Prosite motif: NA

Important sites: ACT_SITE 151-151 ACT_SITE 180-180

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
3.3 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELNKYIDHTLLKADATSADIKKICDEAIKYDFKSVCVNSCYTSLVKKSLENSSALVCTV
CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
VGFPLGAMSTKSKAFEAKTAIEDGADEIDMVINIGKLKEKDYDYVEKDIQAVRDATKGKV
ECCCCCCCCCHHHHHHHHHHHHCCCCHHHHHEEHHHHCCCCHHHHHHHHHHHHHHHCCHH
LKVIIETCLLTDEEKKKACEISVKCGADFVKTSTGFSTGGAKVEDVKLMKDTVADKAMVK
HHHHHHHHHCCCHHHHHHEEEEEECCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
ASGGIHSREEALAMIENGADRIGASSGIKIVEG
HCCCCCHHHHHHHHHHCCHHHCCCCCCEEEECC
>Mature Secondary Structure
MELNKYIDHTLLKADATSADIKKICDEAIKYDFKSVCVNSCYTSLVKKSLENSSALVCTV
CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
VGFPLGAMSTKSKAFEAKTAIEDGADEIDMVINIGKLKEKDYDYVEKDIQAVRDATKGKV
ECCCCCCCCCHHHHHHHHHHHHCCCCHHHHHEEHHHHCCCCHHHHHHHHHHHHHHHCCHH
LKVIIETCLLTDEEKKKACEISVKCGADFVKTSTGFSTGGAKVEDVKLMKDTVADKAMVK
HHHHHHHHHCCCHHHHHHEEEEEECCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
ASGGIHSREEALAMIENGADRIGASSGIKIVEG
HCCCCCHHHHHHHHHHCCHHHCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA