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The map label for this gene is tdcF [C]

Identifier: 169824068

GI number: 169824068

Start: 422552

End: 422920

Strand: Direct

Name: tdcF [C]

Synonym: FMG_0371

Alternate gene names: 169824068

Gene position: 422552-422920 (Clockwise)

Preceding gene: 169824067

Following gene: 169824069

Centisome position: 23.51

GC content: 34.42

Gene sequence:

>369_bases
ATGAAATTTTTACATTCAGACAAAGCACCTGCTGCAATTGGACCATATTCACAAGCAACATCTGCTAACAAAACAATTTA
TGTATCAGGACAACTTCCAATAGTTGATGGAGAATTACAAACTGATATAAGAAAAGCTACAAAAGCATCACTAGATAATA
TTTTACATATTATCGAATCTGAAGGCGGCAAAGTAGAAAACATCGCAAGAGTTGGCGTGTTCATGCAAGATTTATCACAA
TTTTCTGATATGAACGAAGTTTATGCAGAATTTTTTGGAGATCACAAACCAGCAAGAAGTGCAGTTCAAGTTGCAGCTCT
TCCAAAAGGAGCTATAATCGAAATAGAAGCAATTGCTGAATTAGATTAA

Upstream 100 bases:

>100_bases
CTGGATTTTGCTAGATCTTAATGATATTATAGTACATGTATTTACAGAAGAAGCACGTTCTTTCTACGATATAGAAAGAT
TGTGGAATTAGGAGGACAGT

Downstream 100 bases:

>100_bases
GAAATCTTCCTCTGAGTAAAATTACTCAGGGGATTTTTTTTTGTAAAATTTTAATTTTGAAAAAATCTTTTAAAATTATT
TGAAAAATTTTCTTGATTTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 122; Mature: 122

Protein sequence:

>122_residues
MKFLHSDKAPAAIGPYSQATSANKTIYVSGQLPIVDGELQTDIRKATKASLDNILHIIESEGGKVENIARVGVFMQDLSQ
FSDMNEVYAEFFGDHKPARSAVQVAALPKGAIIEIEAIAELD

Sequences:

>Translated_122_residues
MKFLHSDKAPAAIGPYSQATSANKTIYVSGQLPIVDGELQTDIRKATKASLDNILHIIESEGGKVENIARVGVFMQDLSQ
FSDMNEVYAEFFGDHKPARSAVQVAALPKGAIIEIEAIAELD
>Mature_122_residues
MKFLHSDKAPAAIGPYSQATSANKTIYVSGQLPIVDGELQTDIRKATKASLDNILHIIESEGGKVENIARVGVFMQDLSQ
FSDMNEVYAEFFGDHKPARSAVQVAALPKGAIIEIEAIAELD

Specific function: Anaerobic degradation of L-threonine to propionate. [C]

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=121, Percent_Identity=41.3223140495868, Blast_Score=100, Evalue=3e-22,
Organism=Escherichia coli, GI87082213, Length=123, Percent_Identity=41.4634146341463, Blast_Score=103, Evalue=4e-24,
Organism=Escherichia coli, GI87082396, Length=123, Percent_Identity=44.7154471544715, Blast_Score=102, Evalue=9e-24,
Organism=Escherichia coli, GI1787245, Length=114, Percent_Identity=34.2105263157895, Blast_Score=69, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI71982075, Length=120, Percent_Identity=42.5, Blast_Score=105, Evalue=8e-24,
Organism=Caenorhabditis elegans, GI25148896, Length=120, Percent_Identity=42.5, Blast_Score=105, Evalue=8e-24,
Organism=Caenorhabditis elegans, GI71982068, Length=120, Percent_Identity=42.5, Blast_Score=104, Evalue=9e-24,
Organism=Saccharomyces cerevisiae, GI6322138, Length=113, Percent_Identity=40.7079646017699, Blast_Score=92, Evalue=3e-20,
Organism=Saccharomyces cerevisiae, GI6320899, Length=99, Percent_Identity=39.3939393939394, Blast_Score=83, Evalue=9e-18,
Organism=Drosophila melanogaster, GI19921376, Length=122, Percent_Identity=36.0655737704918, Blast_Score=79, Evalue=6e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13174; Mature: 13174

Theoretical pI: Translated: 4.69; Mature: 4.69

Prosite motif: PS01094 UPF0076

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFLHSDKAPAAIGPYSQATSANKTIYVSGQLPIVDGELQTDIRKATKASLDNILHIIES
CCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEECCHHHHHHHHHHHHHHHHHHHHHHC
EGGKVENIARVGVFMQDLSQFSDMNEVYAEFFGDHKPARSAVQVAALPKGAIIEIEAIAE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHEEHHCCCCCCEEEEEEEEC
LD
CC
>Mature Secondary Structure
MKFLHSDKAPAAIGPYSQATSANKTIYVSGQLPIVDGELQTDIRKATKASLDNILHIIES
CCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEECCHHHHHHHHHHHHHHHHHHHHHHC
EGGKVENIARVGVFMQDLSQFSDMNEVYAEFFGDHKPARSAVQVAALPKGAIIEIEAIAE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHEEHHCCCCCCEEEEEEEEC
LD
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12622808 [H]