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The map label for this gene is rne [H]

Identifier: 169824060

GI number: 169824060

Start: 417345

End: 418349

Strand: Direct

Name: rne [H]

Synonym: FMG_0363

Alternate gene names: 169824060

Gene position: 417345-418349 (Clockwise)

Preceding gene: 169824059

Following gene: 169824061

Centisome position: 23.22

GC content: 28.56

Gene sequence:

>1005_bases
ATGAAATACCTATTTATTGACAAAAACACTTGGGGTTACTACGATGATGAGCTGAAATTATTGGGAGATTACGACAGTGA
GCTGGGTAACATTTATGTCGCTAAAATCACAAAATACGACAAGAAACTCGACGCATTTTTTATAGAATACGATAAAAAGA
AAACTGGATTTCTCAATAATACATCATTTACACAAGATTTGAAACCTTCAGATGAAATACTGGTTCAAATGACAAAAGAA
TCAATTGGCGATAAATACCCCAAATTCACAACGAAAATTACGATTGAAACTGAAAATTTGAAATACACAAATGGCGACAA
ATTAACATTTGAAGGAAAACAAAAATACAAAGATATCGATGATTTCAAACAAAAATACACATTCACAGGAATTGTGGGAG
AAAATTTCTTCAAACAAGAAAAAGCACAACAAGAAAAAGAAATGAATTTTATTTTAAATAATTTACATTACATTGAAACA
GAGAAGAAATTTCTACCAATTCCTAAACTTTTGTACAAGAAAAATCCTGTGGACAAAATAATTCAAGAAGAAAATGTAGA
TTATCTGATTACTAATGACAAAATTGTTTACAGACAGTACAAAGAAATTTTGAATGTAAAATTTGATGAAAATTACAATT
ATAACTATGATAATTTGATAAGTCGTGATATAATAGATAAAAATTCAGAAATAATAAAACTGGACAATAACGCAGAAATT
GTCATCCAGAAAACTGAAGCAATGTGGGTTGTGGATGTGAATTCTTCCCAAATGATTGTTGGTGAAAATTATTTCCACGA
ACTTAACACAAAAGCTTTGAAGAAAATCCATCAAATGATGTATTTGAAGAAAATGGTGGGAATGGTTATCGTTGATTGTG
TCAGAGAAGGTGACAACAAAAAGTTATCAGATTTTATTAAATATGAATTTTGTGAACCGAATATAAATTTTCATGGATTT
AGCAATTTGAATCTATTAGAATTCACAGTAAAACTTGACAAATAA

Upstream 100 bases:

>100_bases
CATATTCAGAAGATGTAGATGAAAAACTAACTGAAATTATCCAAAATTACAAACAAGACAAAGAAGCCAAAATCGGATTT
TTCGACAGGATATTCAAAAG

Downstream 100 bases:

>100_bases
ATCAAATTACTGTACAATTATTTGGTGTGTAACCGCTCGAATCGGGTTTTCAAACTTTAAAAGTACCTTGATTTGGCGAG
TCTTAAAAATGAGGAGGTGC

Product: ribonuclease G

Products: NA

Alternate protein names: RNase E [H]

Number of amino acids: Translated: 334; Mature: 334

Protein sequence:

>334_residues
MKYLFIDKNTWGYYDDELKLLGDYDSELGNIYVAKITKYDKKLDAFFIEYDKKKTGFLNNTSFTQDLKPSDEILVQMTKE
SIGDKYPKFTTKITIETENLKYTNGDKLTFEGKQKYKDIDDFKQKYTFTGIVGENFFKQEKAQQEKEMNFILNNLHYIET
EKKFLPIPKLLYKKNPVDKIIQEENVDYLITNDKIVYRQYKEILNVKFDENYNYNYDNLISRDIIDKNSEIIKLDNNAEI
VIQKTEAMWVVDVNSSQMIVGENYFHELNTKALKKIHQMMYLKKMVGMVIVDCVREGDNKKLSDFIKYEFCEPNINFHGF
SNLNLLEFTVKLDK

Sequences:

>Translated_334_residues
MKYLFIDKNTWGYYDDELKLLGDYDSELGNIYVAKITKYDKKLDAFFIEYDKKKTGFLNNTSFTQDLKPSDEILVQMTKE
SIGDKYPKFTTKITIETENLKYTNGDKLTFEGKQKYKDIDDFKQKYTFTGIVGENFFKQEKAQQEKEMNFILNNLHYIET
EKKFLPIPKLLYKKNPVDKIIQEENVDYLITNDKIVYRQYKEILNVKFDENYNYNYDNLISRDIIDKNSEIIKLDNNAEI
VIQKTEAMWVVDVNSSQMIVGENYFHELNTKALKKIHQMMYLKKMVGMVIVDCVREGDNKKLSDFIKYEFCEPNINFHGF
SNLNLLEFTVKLDK
>Mature_334_residues
MKYLFIDKNTWGYYDDELKLLGDYDSELGNIYVAKITKYDKKLDAFFIEYDKKKTGFLNNTSFTQDLKPSDEILVQMTKE
SIGDKYPKFTTKITIETENLKYTNGDKLTFEGKQKYKDIDDFKQKYTFTGIVGENFFKQEKAQQEKEMNFILNNLHYIET
EKKFLPIPKLLYKKNPVDKIIQEENVDYLITNDKIVYRQYKEILNVKFDENYNYNYDNLISRDIIDKNSEIIKLDNNAEI
VIQKTEAMWVVDVNSSQMIVGENYFHELNTKALKKIHQMMYLKKMVGMVIVDCVREGDNKKLSDFIKYEFCEPNINFHGF
SNLNLLEFTVKLDK

Specific function: This protein matures 5S rRNA from its precursors from all the rRNA genes. It is the major endoribonuclease participating in mRNA turnover [H]

COG id: COG1530

COG function: function code J; Ribonucleases G and E

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR019307
- InterPro:   IPR022967
- InterPro:   IPR004659 [H]

Pfam domain/function: PF10150 RNase_E_G; PF00575 S1 [H]

EC number: =3.1.26.12 [H]

Molecular weight: Translated: 39699; Mature: 39699

Theoretical pI: Translated: 5.58; Mature: 5.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYLFIDKNTWGYYDDELKLLGDYDSELGNIYVAKITKYDKKLDAFFIEYDKKKTGFLNN
CEEEEEECCCCCCCCCCEEEEECCCCCCCCEEEEEEEHHHHHHEEEEEEECCCCCCCCCC
TSFTQDLKPSDEILVQMTKESIGDKYPKFTTKITIETENLKYTNGDKLTFEGKQKYKDID
CCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEEEECCEEEECCCEEEECCCHHCCCHH
DFKQKYTFTGIVGENFFKQEKAQQEKEMNFILNNLHYIETEKKFLPIPKLLYKKNPVDKI
HHHHHEEEEEECCCHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCHHHHCCCCHHHH
IQEENVDYLITNDKIVYRQYKEILNVKFDENYNYNYDNLISRDIIDKNSEIIKLDNNAEI
HHHCCCCEEEECCEEHHHHHHHHHCEEECCCCCCCHHHHHHHHHHCCCCCEEEECCCCEE
VIQKTEAMWVVDVNSSQMIVGENYFHELNTKALKKIHQMMYLKKMVGMVIVDCVREGDNK
EEEEECEEEEEECCCCEEEECCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
KLSDFIKYEFCEPNINFHGFSNLNLLEFTVKLDK
HHHHHHEEEEECCCCCCCCCCCCEEEEEEEEECC
>Mature Secondary Structure
MKYLFIDKNTWGYYDDELKLLGDYDSELGNIYVAKITKYDKKLDAFFIEYDKKKTGFLNN
CEEEEEECCCCCCCCCCEEEEECCCCCCCCEEEEEEEHHHHHHEEEEEEECCCCCCCCCC
TSFTQDLKPSDEILVQMTKESIGDKYPKFTTKITIETENLKYTNGDKLTFEGKQKYKDID
CCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEEEECCEEEECCCEEEECCCHHCCCHH
DFKQKYTFTGIVGENFFKQEKAQQEKEMNFILNNLHYIETEKKFLPIPKLLYKKNPVDKI
HHHHHEEEEEECCCHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCHHHHCCCCHHHH
IQEENVDYLITNDKIVYRQYKEILNVKFDENYNYNYDNLISRDIIDKNSEIIKLDNNAEI
HHHCCCCEEEECCEEHHHHHHHHHCEEECCCCCCCHHHHHHHHHHCCCCCEEEECCCCEE
VIQKTEAMWVVDVNSSQMIVGENYFHELNTKALKKIHQMMYLKKMVGMVIVDCVREGDNK
EEEEECEEEEEECCCCEEEECCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
KLSDFIKYEFCEPNINFHGFSNLNLLEFTVKLDK
HHHHHHEEEEECCCCCCCCCCCCEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12522265 [H]