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The map label for this gene is radC [C]

Identifier: 169824054

GI number: 169824054

Start: 410422

End: 411093

Strand: Direct

Name: radC [C]

Synonym: FMG_0357

Alternate gene names: 169824054

Gene position: 410422-411093 (Clockwise)

Preceding gene: 169824053

Following gene: 169824055

Centisome position: 22.83

GC content: 34.23

Gene sequence:

>672_bases
ATGAGAGTTAAGGAAATGAATGAGTCCCTAAGACCCAGAGAAAAAATGAAAATCAATGGTATTTCTTCAATGAGCGATGA
AGAATTGATGCAAATCATCTTGAAGACTGGAATCAAAGAAGAAGGAGTAGAAATTCTCTCGAAGAGAGTCATTGATTACA
TTAACGAAAATGATTACAAGGATTTATGCGTTGAGGAATTAATGAAGATAAAGGGAATTGGGATGGCAAAGGCTACATCA
ATCTTAGCTGGAATTGAAATAGGAAGAAGACTTTCTTTGAGAAAAGCGATGGATAGTTTCAGTCTGAATGATCCAGATAG
CGTTGCAGAGATTTTTTGTAATGAGATTGGAAGTTGCGATGTGGAAAACTTCTATGCACTACTTCTCGATACGAAAAACA
GAATTATTTCCAAAGAACTTATTAGCAAGGGTACTATAAATCAATCTATCGTTCATCCTAGAGAAGTTTTTAAATCTGCT
ATTAAAAAGGGAGCGAATTCGATTATTTTAGTACACAATCATCCGTCAGGCTCACTTATTCCATCAAATGCGGATATTGA
AGTTACAAAAAGATTGGATAAGGTAGGAGATTTGGTAGGAATACAAGTGTTAGATCATATTATCGTTAGTTCAAACGATA
GTTTGAGTATGAGGAAAGGAATGTATTTTTAA

Upstream 100 bases:

>100_bases
TGAGTATATTTACAGGTGTATTTGTTGGACTTACTTCAAATTACCTAACAAATGCACTTTCTAAGCAAAAAAATTATTTG
TTTAATAATAGGAGATAACA

Downstream 100 bases:

>100_bases
ATGAAATTATTTAAATTTCAACAAGAGGGTTTGGGAATTGATTTGGGAACTTCTAATTCCATTATTTCCGATGAAAATGG
GAAAATAATAATCAACGAAC

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 223; Mature: 223

Protein sequence:

>223_residues
MRVKEMNESLRPREKMKINGISSMSDEELMQIILKTGIKEEGVEILSKRVIDYINENDYKDLCVEELMKIKGIGMAKATS
ILAGIEIGRRLSLRKAMDSFSLNDPDSVAEIFCNEIGSCDVENFYALLLDTKNRIISKELISKGTINQSIVHPREVFKSA
IKKGANSIILVHNHPSGSLIPSNADIEVTKRLDKVGDLVGIQVLDHIIVSSNDSLSMRKGMYF

Sequences:

>Translated_223_residues
MRVKEMNESLRPREKMKINGISSMSDEELMQIILKTGIKEEGVEILSKRVIDYINENDYKDLCVEELMKIKGIGMAKATS
ILAGIEIGRRLSLRKAMDSFSLNDPDSVAEIFCNEIGSCDVENFYALLLDTKNRIISKELISKGTINQSIVHPREVFKSA
IKKGANSIILVHNHPSGSLIPSNADIEVTKRLDKVGDLVGIQVLDHIIVSSNDSLSMRKGMYF
>Mature_223_residues
MRVKEMNESLRPREKMKINGISSMSDEELMQIILKTGIKEEGVEILSKRVIDYINENDYKDLCVEELMKIKGIGMAKATS
ILAGIEIGRRLSLRKAMDSFSLNDPDSVAEIFCNEIGSCDVENFYALLLDTKNRIISKELISKGTINQSIVHPREVFKSA
IKKGANSIILVHNHPSGSLIPSNADIEVTKRLDKVGDLVGIQVLDHIIVSSNDSLSMRKGMYF

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family

Homologues:

Organism=Escherichia coli, GI87082300, Length=217, Percent_Identity=33.1797235023041, Blast_Score=126, Evalue=1e-30,
Organism=Escherichia coli, GI2367100, Length=138, Percent_Identity=40.5797101449275, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1788312, Length=139, Percent_Identity=35.9712230215827, Blast_Score=92, Evalue=2e-20,
Organism=Escherichia coli, GI1788997, Length=95, Percent_Identity=43.1578947368421, Blast_Score=86, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y357_FINM2 (B0S3Y4)

Other databases:

- EMBL:   AP008971
- RefSeq:   YP_001691665.1
- ProteinModelPortal:   B0S3Y4
- SMR:   B0S3Y4
- GeneID:   6019360
- GenomeReviews:   AP008971_GR
- KEGG:   fma:FMG_0357
- HOGENOM:   HBG751042
- OMA:   DKPREKL
- BioCyc:   FMAG334413:FMG_0357-MONOMER
- InterPro:   IPR003583
- InterPro:   IPR001405
- InterPro:   IPR020891
- SMART:   SM00278
- TIGRFAMs:   TIGR00608

Pfam domain/function: PF04002 DUF2466

EC number: NA

Molecular weight: Translated: 24913; Mature: 24913

Theoretical pI: Translated: 6.94; Mature: 6.94

Prosite motif: PS01302 UPF0758

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVKEMNESLRPREKMKINGISSMSDEELMQIILKTGIKEEGVEILSKRVIDYINENDYK
CCCHHHHHHCCCHHHHEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHH
DLCVEELMKIKGIGMAKATSILAGIEIGRRLSLRKAMDSFSLNDPDSVAEIFCNEIGSCD
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCC
VENFYALLLDTKNRIISKELISKGTINQSIVHPREVFKSAIKKGANSIILVHNHPSGSLI
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHCCCCEEEEEEECCCCCCC
PSNADIEVTKRLDKVGDLVGIQVLDHIIVSSNDSLSMRKGMYF
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCC
>Mature Secondary Structure
MRVKEMNESLRPREKMKINGISSMSDEELMQIILKTGIKEEGVEILSKRVIDYINENDYK
CCCHHHHHHCCCHHHHEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHH
DLCVEELMKIKGIGMAKATSILAGIEIGRRLSLRKAMDSFSLNDPDSVAEIFCNEIGSCD
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCC
VENFYALLLDTKNRIISKELISKGTINQSIVHPREVFKSAIKKGANSIILVHNHPSGSLI
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHCCCCEEEEEEECCCCCCC
PSNADIEVTKRLDKVGDLVGIQVLDHIIVSSNDSLSMRKGMYF
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA