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The map label for this gene is kdgT [H]

Identifier: 169824021

GI number: 169824021

Start: 380257

End: 381189

Strand: Direct

Name: kdgT [H]

Synonym: FMG_0324

Alternate gene names: 169824021

Gene position: 380257-381189 (Clockwise)

Preceding gene: 169824020

Following gene: 169824024

Centisome position: 21.15

GC content: 34.94

Gene sequence:

>933_bases
ATGAAAATAATTAAAAAAATTCCTGGTGGAACATTATTAGTGCCGATGATGATATCGGCATTGATTAATACATTTTTTCC
AAATCTTTTCAAAATCGGTGGAGTAACAGAATCGTTCTTCGGCCCATCGAGTTTGGGATTTATATTGGGAGCTACGATAT
TTATATCAGGTTGTACAGTAAAATTAAGCACAATTAAAAGCGTAGTTAAAATTTACGGGCTGTTAATAATCGTAAGAACA
GCAGTAGCCGCATTATTTACAATATTGTTTTTCAAATTTTTCGGAATGAAAGGAATCTTGGGAATAAGTTTGATAGGATT
TATTTGTACAATCACATCATTAAATCCTTCGCTTTTCTTGGCAATAATGGAAGATTGTGGAGATGAAGTTGACATGTCAG
CATTCGGATTCATATCGCTATTTGCAACTCCTGCCATAGCGATGCTTATTTTCGGAATTTCCCAACCAACAAATGTAGAT
TACATGTCAATAGTTTCGTTGATAATTCCATTAGTATTGGGAGTTGCAATAGGAAATCTTGACAAAGATTTGGGCAAATT
CATATCAACAGGAATGCCATTTATGATATTCGCACTTGGTTGGTCAGTTGGTAACAGCATCAATCTATTCGAAGCTGTCA
AAGCAGGATTCTCGGGAGTAATAATGGCAGTAATTTATTACATCTTGATATTCTTACCAATGCTATTTGTAGAAAGAAAA
GTTTTGAAGAGAGACGGAGTATCCGCTGGTGGATTGTCAACAATTGCAGGATTGTCAGCAAGTATTCCAATGATAATGGC
AGCAAATGATCCTTCATTAACAGTTTATGCACCAAGAGCAGCAGCCATTGTAACATTCGGCGTAATAATTTCATCATTCG
TTTCGCCATTCTTATGCAATAAATTGTACACTGGTGAAAAAAAGAAAAAATAA

Upstream 100 bases:

>100_bases
AAAATTCACAATCAATGAAGATTCAATGATTATCGCAGCAAAAGCTATGGGAGCTGTTGCATTGAAATATTTAAACGAAA
AATAAACGGGGGATTTTAAA

Downstream 100 bases:

>100_bases
ATAAAATTTAAGCCAATACATTTTGAAAATGTATTGGTTTTTTCTTGAGAAAAATTAGCGATAAAATATAAAATAGTCAA
ATTAGTATGTGATATAATTA

Product: 2-keto-3-deoxygluconate permease

Products: Proton [Cytoplasm]; 2-dehydro-3-deoxy-D-gluconate [Cytoplasm] [C]

Alternate protein names: KDG permease [H]

Number of amino acids: Translated: 310; Mature: 310

Protein sequence:

>310_residues
MKIIKKIPGGTLLVPMMISALINTFFPNLFKIGGVTESFFGPSSLGFILGATIFISGCTVKLSTIKSVVKIYGLLIIVRT
AVAALFTILFFKFFGMKGILGISLIGFICTITSLNPSLFLAIMEDCGDEVDMSAFGFISLFATPAIAMLIFGISQPTNVD
YMSIVSLIIPLVLGVAIGNLDKDLGKFISTGMPFMIFALGWSVGNSINLFEAVKAGFSGVIMAVIYYILIFLPMLFVERK
VLKRDGVSAGGLSTIAGLSASIPMIMAANDPSLTVYAPRAAAIVTFGVIISSFVSPFLCNKLYTGEKKKK

Sequences:

>Translated_310_residues
MKIIKKIPGGTLLVPMMISALINTFFPNLFKIGGVTESFFGPSSLGFILGATIFISGCTVKLSTIKSVVKIYGLLIIVRT
AVAALFTILFFKFFGMKGILGISLIGFICTITSLNPSLFLAIMEDCGDEVDMSAFGFISLFATPAIAMLIFGISQPTNVD
YMSIVSLIIPLVLGVAIGNLDKDLGKFISTGMPFMIFALGWSVGNSINLFEAVKAGFSGVIMAVIYYILIFLPMLFVERK
VLKRDGVSAGGLSTIAGLSASIPMIMAANDPSLTVYAPRAAAIVTFGVIISSFVSPFLCNKLYTGEKKKK
>Mature_310_residues
MKIIKKIPGGTLLVPMMISALINTFFPNLFKIGGVTESFFGPSSLGFILGATIFISGCTVKLSTIKSVVKIYGLLIIVRT
AVAALFTILFFKFFGMKGILGISLIGFICTITSLNPSLFLAIMEDCGDEVDMSAFGFISLFATPAIAMLIFGISQPTNVD
YMSIVSLIIPLVLGVAIGNLDKDLGKFISTGMPFMIFALGWSVGNSINLFEAVKAGFSGVIMAVIYYILIFLPMLFVERK
VLKRDGVSAGGLSTIAGLSASIPMIMAANDPSLTVYAPRAAAIVTFGVIISSFVSPFLCNKLYTGEKKKK

Specific function: The 2-keto-3-deoxygluconate permease transports the degraded pectin products into the bacterial cell, where they serve as carbon and energy sources. This is a hydrogen coupled transport system [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the kdgT transporter family [H]

Homologues:

Organism=Escherichia coli, GI87082349, Length=314, Percent_Identity=28.343949044586, Blast_Score=110, Evalue=8e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004684
- InterPro:   IPR018395
- ProDom:   PD024513 [H]

Pfam domain/function: PF03812 KdgT [H]

EC number: NA

Molecular weight: Translated: 33078; Mature: 33078

Theoretical pI: Translated: 9.87; Mature: 9.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIIKKIPGGTLLVPMMISALINTFFPNLFKIGGVTESFFGPSSLGFILGATIFISGCTV
CCCHHHCCCCEEHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHCCEE
KLSTIKSVVKIYGLLIIVRTAVAALFTILFFKFFGMKGILGISLIGFICTITSLNPSLFL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
AIMEDCGDEVDMSAFGFISLFATPAIAMLIFGISQPTNVDYMSIVSLIIPLVLGVAIGNL
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCC
DKDLGKFISTGMPFMIFALGWSVGNSINLFEAVKAGFSGVIMAVIYYILIFLPMLFVERK
HHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
VLKRDGVSAGGLSTIAGLSASIPMIMAANDPSLTVYAPRAAAIVTFGVIISSFVSPFLCN
HHHHCCCCCCCHHHHHHCCCCCCEEEECCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHH
KLYTGEKKKK
HHHCCCCCCC
>Mature Secondary Structure
MKIIKKIPGGTLLVPMMISALINTFFPNLFKIGGVTESFFGPSSLGFILGATIFISGCTV
CCCHHHCCCCEEHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHCCEE
KLSTIKSVVKIYGLLIIVRTAVAALFTILFFKFFGMKGILGISLIGFICTITSLNPSLFL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
AIMEDCGDEVDMSAFGFISLFATPAIAMLIFGISQPTNVDYMSIVSLIIPLVLGVAIGNL
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCC
DKDLGKFISTGMPFMIFALGWSVGNSINLFEAVKAGFSGVIMAVIYYILIFLPMLFVERK
HHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
VLKRDGVSAGGLSTIAGLSASIPMIMAANDPSLTVYAPRAAAIVTFGVIISSFVSPFLCN
HHHHCCCCCCCHHHHHHCCCCCCEEEECCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHH
KLYTGEKKKK
HHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Proton [Periplasm]; 2-dehydro-3-deoxy-D-gluconate [Periplasm] [C]

Specific reaction: Proton [Periplasm] + 2-dehydro-3-deoxy-D-gluconate [Periplasm] = Proton [Cytoplasm] + 2-dehydro-3-deoxy-D-gluconate [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8760912; 9384377 [H]