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The map label for this gene is ydcM [C]

Identifier: 169823667

GI number: 169823667

Start: 151253

End: 152389

Strand: Reverse

Name: ydcM [C]

Synonym: FMG_P0153

Alternate gene names: 169823667

Gene position: 152389-151253 (Counterclockwise)

Preceding gene: 169823668

Following gene: 169823665

Centisome position: 80.56

GC content: 30.08

Gene sequence:

>1137_bases
ATGAGAAAGAAAAAAGGAGTAAAAAACAAAGCAATAAAATACAGATTATATCCAACGACTGAACAAGAAATATACTTTTC
TAAATGCTTTGGATGTTGTAGAAAAATCTGGAACTTGATGCTTTGTGATAGAGAAAAATCATATAAAGAAACTGGAAAAT
CTGTTAAAAATACACCTGCTTTATATAAATCTGAATATCCTTATCTTAAAGAGGTTGATTCATTAGCCCTTGCCAATGTA
TATCTTGACTTAGAACTTGCATATAAGAGATTTTTCAATAAAAAGGGTGGTTATCCTAAGTTTAAGTCATTAAAGAAATC
AAGAAAATCATACACTACTAATAATCAAAATGGAACTATAGCTATTACGGATAACGCAATAAAACTACCGAAAGCAGGCT
TTGTTAAAGCTAAGATTCATAGACAACCTAAATCTGATTGGAAATTAAAATCAGCAACAATTTTTCAAACTACAGATGGT
CTTTATTTTGTGTCTGTTATCTTTGAGTATGAAGAAAATATAGACAAGATTACTAACTTTGATAATTGTATAGGACTAGA
TTATAAGTCAGATGGTTTGTATATGGATAGCTTTGGTAATGTAGGAGATAATCATAAATTTTATCGTGAAAGTCATAAGA
AACTTGCGAAAGAACAAAGACGTTTGTCTCGTAAAATAGGCTCTAAAAAGAACGAAACTAAGTCAAATAACTACTTAAAA
CAACTTAAAAAGGTCAATAAGATTCATAGACATATCTCAAACCAAAGACTAGATAATCTGCACAAAAAGTCTAACGAGAT
AGCCAATCGTTATGATATCGTATGTGTAGAAAATCTTAATATGAGAAATATGTCTAATAAAGGGTTTAAAAACGGAAAAG
CCACTATGGATAACGGATATGGTATGTTCTTAAATTTCTTAGCATACAAGCTAAATGATAGAGGAAAATACTTTATCAAA
GTCGATAAGTGGTTTCCGTCAAGTCAGATATGTAGTGTTTGTGGTGCTAAAAAGAAAATACCATTAAACGAAAGAACTTA
TATTTGTGAGTGCGGAAATGTCATTGATAGAGACTTGAACGCTGCAATAAACATAAAAAAAGAAGGACTAAGACTACTAA
AAGAAATGGTAGCCTAA

Upstream 100 bases:

>100_bases
AAAAAATCCCCCATCCTCTATAGGTGGGGGATGAATTTCGGTGAACAATGCGTAACTATTGAATTTATAACAAATTTATA
GCATAAGCAAGGAGAAAAGG

Downstream 100 bases:

>100_bases
AATAATATATTCGTAGGCTAGGAACTAGCCGAAGTTACGCTTGTGGACTTTGTGTAAGACGATTAATCTGTTTTGATTTA
TCAATCAGATTTATCGCAGT

Product: hypothetical protein

Products: NA

Alternate protein names: ORF401 [H]

Number of amino acids: Translated: 378; Mature: 378

Protein sequence:

>378_residues
MRKKKGVKNKAIKYRLYPTTEQEIYFSKCFGCCRKIWNLMLCDREKSYKETGKSVKNTPALYKSEYPYLKEVDSLALANV
YLDLELAYKRFFNKKGGYPKFKSLKKSRKSYTTNNQNGTIAITDNAIKLPKAGFVKAKIHRQPKSDWKLKSATIFQTTDG
LYFVSVIFEYEENIDKITNFDNCIGLDYKSDGLYMDSFGNVGDNHKFYRESHKKLAKEQRRLSRKIGSKKNETKSNNYLK
QLKKVNKIHRHISNQRLDNLHKKSNEIANRYDIVCVENLNMRNMSNKGFKNGKATMDNGYGMFLNFLAYKLNDRGKYFIK
VDKWFPSSQICSVCGAKKKIPLNERTYICECGNVIDRDLNAAINIKKEGLRLLKEMVA

Sequences:

>Translated_378_residues
MRKKKGVKNKAIKYRLYPTTEQEIYFSKCFGCCRKIWNLMLCDREKSYKETGKSVKNTPALYKSEYPYLKEVDSLALANV
YLDLELAYKRFFNKKGGYPKFKSLKKSRKSYTTNNQNGTIAITDNAIKLPKAGFVKAKIHRQPKSDWKLKSATIFQTTDG
LYFVSVIFEYEENIDKITNFDNCIGLDYKSDGLYMDSFGNVGDNHKFYRESHKKLAKEQRRLSRKIGSKKNETKSNNYLK
QLKKVNKIHRHISNQRLDNLHKKSNEIANRYDIVCVENLNMRNMSNKGFKNGKATMDNGYGMFLNFLAYKLNDRGKYFIK
VDKWFPSSQICSVCGAKKKIPLNERTYICECGNVIDRDLNAAINIKKEGLRLLKEMVA
>Mature_378_residues
MRKKKGVKNKAIKYRLYPTTEQEIYFSKCFGCCRKIWNLMLCDREKSYKETGKSVKNTPALYKSEYPYLKEVDSLALANV
YLDLELAYKRFFNKKGGYPKFKSLKKSRKSYTTNNQNGTIAITDNAIKLPKAGFVKAKIHRQPKSDWKLKSATIFQTTDG
LYFVSVIFEYEENIDKITNFDNCIGLDYKSDGLYMDSFGNVGDNHKFYRESHKKLAKEQRRLSRKIGSKKNETKSNNYLK
QLKKVNKIHRHISNQRLDNLHKKSNEIANRYDIVCVENLNMRNMSNKGFKNGKATMDNGYGMFLNFLAYKLNDRGKYFIK
VDKWFPSSQICSVCGAKKKIPLNERTYICECGNVIDRDLNAAINIKKEGLRLLKEMVA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=372, Percent_Identity=29.3010752688172, Blast_Score=120, Evalue=1e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 44003; Mature: 44003

Theoretical pI: Translated: 10.32; Mature: 10.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKKKGVKNKAIKYRLYPTTEQEIYFSKCFGCCRKIWNLMLCDREKSYKETGKSVKNTPA
CCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHCCCC
LYKSEYPYLKEVDSLALANVYLDLELAYKRFFNKKGGYPKFKSLKKSRKSYTTNNQNGTI
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCEE
AITDNAIKLPKAGFVKAKIHRQPKSDWKLKSATIFQTTDGLYFVSVIFEYEENIDKITNF
EEECCCEECCCCCCEEHHCCCCCCCCCEECCEEEEEECCCEEEEHHHHHHHHHHHHHCCC
DNCIGLDYKSDGLYMDSFGNVGDNHKFYRESHKKLAKEQRRLSRKIGSKKNETKSNNYLK
CCEEECCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
QLKKVNKIHRHISNQRLDNLHKKSNEIANRYDIVCVENLNMRNMSNKGFKNGKATMDNGY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCCCCCCCCCCCCCCCCH
GMFLNFLAYKLNDRGKYFIKVDKWFPSSQICSVCGAKKKIPLNERTYICECGNVIDRDLN
HHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHCCCCCCCCCCCEEEEECCCHHHHCCC
AAINIKKEGLRLLKEMVA
CEEEECHHHHHHHHHHHC
>Mature Secondary Structure
MRKKKGVKNKAIKYRLYPTTEQEIYFSKCFGCCRKIWNLMLCDREKSYKETGKSVKNTPA
CCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHCCCC
LYKSEYPYLKEVDSLALANVYLDLELAYKRFFNKKGGYPKFKSLKKSRKSYTTNNQNGTI
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCEE
AITDNAIKLPKAGFVKAKIHRQPKSDWKLKSATIFQTTDGLYFVSVIFEYEENIDKITNF
EEECCCEECCCCCCEEHHCCCCCCCCCEECCEEEEEECCCEEEEHHHHHHHHHHHHHCCC
DNCIGLDYKSDGLYMDSFGNVGDNHKFYRESHKKLAKEQRRLSRKIGSKKNETKSNNYLK
CCEEECCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
QLKKVNKIHRHISNQRLDNLHKKSNEIANRYDIVCVENLNMRNMSNKGFKNGKATMDNGY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCCCCCCCCCCCCCCCCH
GMFLNFLAYKLNDRGKYFIKVDKWFPSSQICSVCGAKKKIPLNERTYICECGNVIDRDLN
HHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHCCCCCCCCCCCEEEEECCCHHHHCCC
AAINIKKEGLRLLKEMVA
CEEEECHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7665509 [H]