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The map label for this gene is yxaF [H]

Identifier: 169629533

GI number: 169629533

Start: 2503995

End: 2504591

Strand: Reverse

Name: yxaF [H]

Synonym: MAB_2447c

Alternate gene names: 169629533

Gene position: 2504591-2503995 (Counterclockwise)

Preceding gene: 169629537

Following gene: 169629532

Centisome position: 49.43

GC content: 67.17

Gene sequence:

>597_bases
ATGCCGGCAAACACTCGCGACCGAATAGTCGCCGCCACCTGCGAGCTCTTCCGCAGGCAGGGCATGACCGGCACCGGGCT
CAAGCAGATCGCGCAGAGCGCGGGGGCGCCCTTCGGGTCGATCTATCACTTCTTTCCCGGGGGTAAGGCACAGCTGGCTG
ACGAGGCAATCCGTGCCGCCGGCGCGATGTATCGGGACCTGGTGCTGGCGGTCTTCGATCAGAATGGCCCCGACCTGGCC
GCGACCATTCGCACCGCATTCGCCGCGGCCGCCGATAATCTCATCGCCACGGACTACACCGACGCCTGCCCGATTGCGAC
GATCGCACTGGAAGTCGCAAGCACCGACGAAGATTTACGGCATGCCACCGCCGAGGTCTTCACAGACTGGATCGAGCAGG
GCACCGAGCGAATCGCCGACACCGGACTACCGCCCGGTACCCGCCGCCGGCTCATACTGGGATTCATCACCGGCCTGGAG
GGCGCATTCGTGCTGAGCCGTGCGTTGCGCGATCCCGAACCGCTGTTCGCCGCGGGCGAGACGGTCGCTGCCGCGGCCAC
CTCGGCGCTGGCGGCGCTAGCGACCCACGCGGAATGA

Upstream 100 bases:

>100_bases
CCTTCCCGATGCCTGACGGAATTGATAGAACGTTCTAGAGAGACCGTACAATGCGTGGTAGGCGGATACAAGACTGTTCA
AACATCCGGAGGGACATGCG

Downstream 100 bases:

>100_bases
AGCGGAATAAAGCGGACTGCGGTCCGGTTAATGCAGGCATAGAACCACAGCCCTCAAGGAGGTTTGCATGCCAGCTATCA
CTGTGTCGGCGATGGAGGCC

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 198; Mature: 197

Protein sequence:

>198_residues
MPANTRDRIVAATCELFRRQGMTGTGLKQIAQSAGAPFGSIYHFFPGGKAQLADEAIRAAGAMYRDLVLAVFDQNGPDLA
ATIRTAFAAAADNLIATDYTDACPIATIALEVASTDEDLRHATAEVFTDWIEQGTERIADTGLPPGTRRRLILGFITGLE
GAFVLSRALRDPEPLFAAGETVAAAATSALAALATHAE

Sequences:

>Translated_198_residues
MPANTRDRIVAATCELFRRQGMTGTGLKQIAQSAGAPFGSIYHFFPGGKAQLADEAIRAAGAMYRDLVLAVFDQNGPDLA
ATIRTAFAAAADNLIATDYTDACPIATIALEVASTDEDLRHATAEVFTDWIEQGTERIADTGLPPGTRRRLILGFITGLE
GAFVLSRALRDPEPLFAAGETVAAAATSALAALATHAE
>Mature_197_residues
PANTRDRIVAATCELFRRQGMTGTGLKQIAQSAGAPFGSIYHFFPGGKAQLADEAIRAAGAMYRDLVLAVFDQNGPDLAA
TIRTAFAAAADNLIATDYTDACPIATIALEVASTDEDLRHATAEVFTDWIEQGTERIADTGLPPGTRRRLILGFITGLEG
AFVLSRALRDPEPLFAAGETVAAAATSALAALATHAE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 20794; Mature: 20662

Theoretical pI: Translated: 4.58; Mature: 4.58

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPANTRDRIVAATCELFRRQGMTGTGLKQIAQSAGAPFGSIYHFFPGGKAQLADEAIRAA
CCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHEECCCCHHHHHHHHHHHH
GAMYRDLVLAVFDQNGPDLAATIRTAFAAAADNLIATDYTDACPIATIALEVASTDEDLR
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCEECCCCCCCCHHHHHHHHHCCHHHHH
HATAEVFTDWIEQGTERIADTGLPPGTRRRLILGFITGLEGAFVLSRALRDPEPLFAAGE
HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHCCC
TVAAAATSALAALATHAE
HHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PANTRDRIVAATCELFRRQGMTGTGLKQIAQSAGAPFGSIYHFFPGGKAQLADEAIRAA
CCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHEECCCCHHHHHHHHHHHH
GAMYRDLVLAVFDQNGPDLAATIRTAFAAAADNLIATDYTDACPIATIALEVASTDEDLR
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCEECCCCCCCCHHHHHHHHHCCHHHHH
HATAEVFTDWIEQGTERIADTGLPPGTRRRLILGFITGLEGAFVLSRALRDPEPLFAAGE
HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHCCC
TVAAAATSALAALATHAE
HHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584049; 9384377 [H]