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The map label for this gene is yidP [H]

Identifier: 169629325

GI number: 169629325

Start: 2265137

End: 2265880

Strand: Direct

Name: yidP [H]

Synonym: MAB_2239

Alternate gene names: 169629325

Gene position: 2265137-2265880 (Clockwise)

Preceding gene: 169629324

Following gene: 169629326

Centisome position: 44.7

GC content: 64.92

Gene sequence:

>744_bases
GTGGCCGCTGCCGAGCCCACACCGTTGCGCCGCCCGCGTGCCGATCAGGCGCGGCTGGTCGCCGACGTGTTGCGTCATCA
GATTCACGCCGGTGGCTACGCCGAGGGTGGTCTGCCGAGCGAGCACGCGTTGGCGGCCGAGTTCTTCGTCTCACGTAACA
CCGTGCGAGAGGCGCTGACCACGCTCAAGGACGAGGGCCTCATTGAGCGGGGGCCCCGCACCGGAACCCATGTCGCGTTG
CGCAAGTACGAACACGGGCTGGATGCCCTGCTTGGGCTCAAGGAGACCTTCAAGGGCTATGGCGAGGTGCGTAACGAGGT
GAGAGTCATCCAGGAGGTAAACGCCCCGCCCGCTGTCGCCCATAGGTTGCGGCTGGATCCGGGCGCGCGCGTCATCTTCA
TCGAGCGCTTGCGCTATCTGGGTGATCTCCCGCTGAGCCTGGACAAGACCTATCTCACCCCGGACGTGGGAGAGGCGGTC
ATCGAGCATCAGCTGGAGACCAACGACGTGTTCGCGTTGATCGAACGCGTCACCGGGCGCCGACTGGGCTCGGCCAACCT
CGCGCTGGAAGCCGTTGCCGCGGACTCGCACTCGGCCGCGACGCTGCAGGTGCCCGATAGTGCTCCGCTGCTGCTCCTCG
AGCGATTGACCCATCTCGACGACGGAACCCCCGTCGACCTCGAGTACATCAGAATGCGTGGGGATCGAATCACCTTGCGC
AGCAATCTACTAAGGGATATTTGA

Upstream 100 bases:

>100_bases
CGCATTGGAACGGACCTGACAGATGTTCATTTCACCCAGCAGGTAGCCGCTGAGCAGGCCTTTAGCGTGTGGGCGAGGTT
GATTCACGTCAGGAGGAGTC

Downstream 100 bases:

>100_bases
GGATTCTCATGACGCTGGTCAACAACCGCATCGACGTCCCGGTAACCATCGACGAATCGCTGTGTATCGACGGCTGCACA
CTCTGCGTCGACATCTGCCC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 247; Mature: 246

Protein sequence:

>247_residues
MAAAEPTPLRRPRADQARLVADVLRHQIHAGGYAEGGLPSEHALAAEFFVSRNTVREALTTLKDEGLIERGPRTGTHVAL
RKYEHGLDALLGLKETFKGYGEVRNEVRVIQEVNAPPAVAHRLRLDPGARVIFIERLRYLGDLPLSLDKTYLTPDVGEAV
IEHQLETNDVFALIERVTGRRLGSANLALEAVAADSHSAATLQVPDSAPLLLLERLTHLDDGTPVDLEYIRMRGDRITLR
SNLLRDI

Sequences:

>Translated_247_residues
MAAAEPTPLRRPRADQARLVADVLRHQIHAGGYAEGGLPSEHALAAEFFVSRNTVREALTTLKDEGLIERGPRTGTHVAL
RKYEHGLDALLGLKETFKGYGEVRNEVRVIQEVNAPPAVAHRLRLDPGARVIFIERLRYLGDLPLSLDKTYLTPDVGEAV
IEHQLETNDVFALIERVTGRRLGSANLALEAVAADSHSAATLQVPDSAPLLLLERLTHLDDGTPVDLEYIRMRGDRITLR
SNLLRDI
>Mature_246_residues
AAAEPTPLRRPRADQARLVADVLRHQIHAGGYAEGGLPSEHALAAEFFVSRNTVREALTTLKDEGLIERGPRTGTHVALR
KYEHGLDALLGLKETFKGYGEVRNEVRVIQEVNAPPAVAHRLRLDPGARVIFIERLRYLGDLPLSLDKTYLTPDVGEAVI
EHQLETNDVFALIERVTGRRLGSANLALEAVAADSHSAATLQVPDSAPLLLLERLTHLDDGTPVDLEYIRMRGDRITLRS
NLLRDI

Specific function: Unknown

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790118, Length=205, Percent_Identity=30.7317073170732, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1786950, Length=211, Percent_Identity=27.4881516587678, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI87082252, Length=218, Percent_Identity=26.605504587156, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI1790540, Length=216, Percent_Identity=25.462962962963, Blast_Score=64, Evalue=8e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 27277; Mature: 27145

Theoretical pI: Translated: 6.43; Mature: 6.43

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAAEPTPLRRPRADQARLVADVLRHQIHAGGYAEGGLPSEHALAAEFFVSRNTVREALT
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
TLKDEGLIERGPRTGTHVALRKYEHGLDALLGLKETFKGYGEVRNEVRVIQEVNAPPAVA
HHHHCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
HRLRLDPGARVIFIERLRYLGDLPLSLDKTYLTPDVGEAVIEHQLETNDVFALIERVTGR
HHEECCCCCEEHHHHHHHHHCCCCCCCCCEECCCHHHHHHHHHHCCCHHHHHHHHHHHCC
RLGSANLALEAVAADSHSAATLQVPDSAPLLLLERLTHLDDGTPVDLEYIRMRGDRITLR
CCCCCCCEEEEEECCCCCCEEEECCCCCHHHHHHHHHHCCCCCCCCHHHHHHCCCEEEHH
SNLLRDI
HHHHHCC
>Mature Secondary Structure 
AAAEPTPLRRPRADQARLVADVLRHQIHAGGYAEGGLPSEHALAAEFFVSRNTVREALT
CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
TLKDEGLIERGPRTGTHVALRKYEHGLDALLGLKETFKGYGEVRNEVRVIQEVNAPPAVA
HHHHCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
HRLRLDPGARVIFIERLRYLGDLPLSLDKTYLTPDVGEAVIEHQLETNDVFALIERVTGR
HHEECCCCCEEHHHHHHHHHCCCCCCCCCEECCCHHHHHHHHHHCCCHHHHHHHHHHHCC
RLGSANLALEAVAADSHSAATLQVPDSAPLLLLERLTHLDDGTPVDLEYIRMRGDRITLR
CCCCCCCEEEEEECCCCCCEEEECCCCCHHHHHHHHHHCCCCCCCCHHHHHHCCCEEEHH
SNLLRDI
HHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7686882; 9278503 [H]