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The map label for this gene is eccD3 [H]

Identifier: 169629312

GI number: 169629312

Start: 2248946

End: 2250334

Strand: Reverse

Name: eccD3 [H]

Synonym: MAB_2226c

Alternate gene names: 169629312

Gene position: 2250334-2248946 (Counterclockwise)

Preceding gene: 169629313

Following gene: 169629311

Centisome position: 44.41

GC content: 67.1

Gene sequence:

>1389_bases
ATGTCTGACAACGCCGTGATGCCCATCGTCCGGGTAGCCGTGCTCGGTGAAGAAAAACTGACCGAAGTCGCCTTGCCGAC
TCAGCTGCCGATGCGCGACATCATTCCCGCGGTACACCGGATGGTCGCCCCCGACGCCACCGAGGCAACAACCCCACAAC
GGCTCAGCCTGGCGCCGGTGAATGGCGCGCCGTTCAGTGCCGACGCGACCCTGGACACCGTGGGCGTCGTAGACGGCGAC
TTGCTGACCCTGCGCCCGACTCCTGCCGGACCTGCGGCGCCCGGCATCGTCGAAGACATCGCGGACGCAGCAGTCATTTT
CTCCGAATCACGCAAGCGCCCGTGGGGCGCAGAGCACATTGCCCGGGTCGGCCGCTTTGGGGTCCTCGGCTTGATCGCAG
CGGCAACGATTCTGGCCATTGTGCACAGCATCCGCACCGGGTCGTCGTTGAGCCTCGCCGGTTTGGCCGTTGTCGCGGTG
GCGGCCGCGATCGGAGCATTGGTGGCACACGTGCGTTCTGCCCGCCTGGGAGCTGAGCTGGCGGTTGCCGCGCTGGTGCC
GATCGCCGGCGCCCTTGCTCTCGCCGTTCCCGGTAGTGGGCTGGCGCCGCGTGTTCTCCTCGGTGCCGCCGGGGTGGCCG
CGTGGTCACTGATCTACCTGATTGTGGCGCGTCAGCTGATTGCCTTCTTCACCGCGACCACGGTGCTGTCGCTGGGCATC
GCCGGTGCGGCGGGCGCCCACGTTCTGTGGCACCCCTCGCTGCTCGTGGTGGGCTGCGGTCTGATCATCGTGGCGCTGCT
GGTTACCGTGCGTGCTGCCCAACTGTCAGCCTTCGCCGCGCGCTTCCCGCTGCCGACCATCCCCGCTCCGGGTGATGCGA
CCCCCTCTGCTCCAGCGATGTCGGTTCTGAAGGATCTGCCGCGTCGCGTTCAGTTGAGTGACTCCCACCAGAGCGGATTC
ATTGCGGGCGCTTCGATTCTGGCCATCCTGGGATCGCTGGCCGTGGTGGGTGGCGCCGCACCGGCAAGTCCGTGGGCGTG
GTACCTGGTAGCCGCGGTAAGCGCTGGCGCGGCACTGCGTGCACGAGTCTGGGATTCGGCGGTATGCAAGGCGTGGCTGC
TGGCGGTTCCCTTCCTGGTATCGACCGCACTGCTGGTGATCTTCGCCGTCGAAGACCGCTACACCGGCGCCCTGGTGGCG
CTTGGCGTGCTGGCCTTGCTGGTCGCCGCGGTGGCGGTAGTCGTGTTCAACCCGAAAATCGGTGAGGCGGAGAGCTACTC
ACTGCCCAGCCGTCGGCTCCTCGGATTCCTCGCCTCGGGTATCGACGCCTCGCTGCTGCCGGTCATCGCGTACCTCACCG
GACTGTTCAGCTGGATCCTCAACCGATGA

Upstream 100 bases:

>100_bases
TCCCAGATGCCCGCGTGACCCGAGACTTCGATTGATGCTGTCCCTGTAATTAGTTCCCTTTTGAGCCCCACCCCCTATCG
AGAGAGTCAAACGAAACACC

Downstream 100 bases:

>100_bases
CACATTTTATCCGCGATGCGCCGCGCGCGCGAAGAGCATTGGGCGGTGTCGTCGCCGCAACGCTACTGGCGCTGTCCCCC
GTGGCAGCCCCTGTTGCCGG

Product: hypothetical protein

Products: NA

Alternate protein names: ESX conserved component D3; Type VII secretion system protein eccD3; T7SS protein eccD3 [H]

Number of amino acids: Translated: 462; Mature: 461

Protein sequence:

>462_residues
MSDNAVMPIVRVAVLGEEKLTEVALPTQLPMRDIIPAVHRMVAPDATEATTPQRLSLAPVNGAPFSADATLDTVGVVDGD
LLTLRPTPAGPAAPGIVEDIADAAVIFSESRKRPWGAEHIARVGRFGVLGLIAAATILAIVHSIRTGSSLSLAGLAVVAV
AAAIGALVAHVRSARLGAELAVAALVPIAGALALAVPGSGLAPRVLLGAAGVAAWSLIYLIVARQLIAFFTATTVLSLGI
AGAAGAHVLWHPSLLVVGCGLIIVALLVTVRAAQLSAFAARFPLPTIPAPGDATPSAPAMSVLKDLPRRVQLSDSHQSGF
IAGASILAILGSLAVVGGAAPASPWAWYLVAAVSAGAALRARVWDSAVCKAWLLAVPFLVSTALLVIFAVEDRYTGALVA
LGVLALLVAAVAVVVFNPKIGEAESYSLPSRRLLGFLASGIDASLLPVIAYLTGLFSWILNR

Sequences:

>Translated_462_residues
MSDNAVMPIVRVAVLGEEKLTEVALPTQLPMRDIIPAVHRMVAPDATEATTPQRLSLAPVNGAPFSADATLDTVGVVDGD
LLTLRPTPAGPAAPGIVEDIADAAVIFSESRKRPWGAEHIARVGRFGVLGLIAAATILAIVHSIRTGSSLSLAGLAVVAV
AAAIGALVAHVRSARLGAELAVAALVPIAGALALAVPGSGLAPRVLLGAAGVAAWSLIYLIVARQLIAFFTATTVLSLGI
AGAAGAHVLWHPSLLVVGCGLIIVALLVTVRAAQLSAFAARFPLPTIPAPGDATPSAPAMSVLKDLPRRVQLSDSHQSGF
IAGASILAILGSLAVVGGAAPASPWAWYLVAAVSAGAALRARVWDSAVCKAWLLAVPFLVSTALLVIFAVEDRYTGALVA
LGVLALLVAAVAVVVFNPKIGEAESYSLPSRRLLGFLASGIDASLLPVIAYLTGLFSWILNR
>Mature_461_residues
SDNAVMPIVRVAVLGEEKLTEVALPTQLPMRDIIPAVHRMVAPDATEATTPQRLSLAPVNGAPFSADATLDTVGVVDGDL
LTLRPTPAGPAAPGIVEDIADAAVIFSESRKRPWGAEHIARVGRFGVLGLIAAATILAIVHSIRTGSSLSLAGLAVVAVA
AAIGALVAHVRSARLGAELAVAALVPIAGALALAVPGSGLAPRVLLGAAGVAAWSLIYLIVARQLIAFFTATTVLSLGIA
GAAGAHVLWHPSLLVVGCGLIIVALLVTVRAAQLSAFAARFPLPTIPAPGDATPSAPAMSVLKDLPRRVQLSDSHQSGFI
AGASILAILGSLAVVGGAAPASPWAWYLVAAVSAGAALRARVWDSAVCKAWLLAVPFLVSTALLVIFAVEDRYTGALVAL
GVLALLVAAVAVVVFNPKIGEAESYSLPSRRLLGFLASGIDASLLPVIAYLTGLFSWILNR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the eccD/snm4 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006707 [H]

Pfam domain/function: PF04600 DUF571 [H]

EC number: NA

Molecular weight: Translated: 46999; Mature: 46868

Theoretical pI: Translated: 9.14; Mature: 9.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDNAVMPIVRVAVLGEEKLTEVALPTQLPMRDIIPAVHRMVAPDATEATTPQRLSLAPV
CCCCCHHHHHHHHHHCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEECC
NGAPFSADATLDTVGVVDGDLLTLRPTPAGPAAPGIVEDIADAAVIFSESRKRPWGAEHI
CCCCCCCCCCCCEEECCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHH
ARVGRFGVLGLIAAATILAIVHSIRTGSSLSLAGLAVVAVAAAIGALVAHVRSARLGAEL
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVAALVPIAGALALAVPGSGLAPRVLLGAAGVAAWSLIYLIVARQLIAFFTATTVLSLGI
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
AGAAGAHVLWHPSLLVVGCGLIIVALLVTVRAAQLSAFAARFPLPTIPAPGDATPSAPAM
CCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHH
SVLKDLPRRVQLSDSHQSGFIAGASILAILGSLAVVGGAAPASPWAWYLVAAVSAGAALR
HHHHHCHHHEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHH
ARVWDSAVCKAWLLAVPFLVSTALLVIFAVEDRYTGALVALGVLALLVAAVAVVVFNPKI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
GEAESYSLPSRRLLGFLASGIDASLLPVIAYLTGLFSWILNR
CCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SDNAVMPIVRVAVLGEEKLTEVALPTQLPMRDIIPAVHRMVAPDATEATTPQRLSLAPV
CCCCHHHHHHHHHHCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEECC
NGAPFSADATLDTVGVVDGDLLTLRPTPAGPAAPGIVEDIADAAVIFSESRKRPWGAEHI
CCCCCCCCCCCCEEECCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHH
ARVGRFGVLGLIAAATILAIVHSIRTGSSLSLAGLAVVAVAAAIGALVAHVRSARLGAEL
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVAALVPIAGALALAVPGSGLAPRVLLGAAGVAAWSLIYLIVARQLIAFFTATTVLSLGI
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
AGAAGAHVLWHPSLLVVGCGLIIVALLVTVRAAQLSAFAARFPLPTIPAPGDATPSAPAM
CCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHH
SVLKDLPRRVQLSDSHQSGFIAGASILAILGSLAVVGGAAPASPWAWYLVAAVSAGAALR
HHHHHCHHHEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHH
ARVWDSAVCKAWLLAVPFLVSTALLVIFAVEDRYTGALVALGVLALLVAAVAVVVFNPKI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
GEAESYSLPSRRLLGFLASGIDASLLPVIAYLTGLFSWILNR
CCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]