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The map label for this gene is ydaM [H]

Identifier: 169628955

GI number: 169628955

Start: 1865564

End: 1866628

Strand: Direct

Name: ydaM [H]

Synonym: MAB_1867

Alternate gene names: 169628955

Gene position: 1865564-1866628 (Clockwise)

Preceding gene: 169628953

Following gene: 169628958

Centisome position: 36.82

GC content: 64.98

Gene sequence:

>1065_bases
GTGCAAAATCCGCCCTATGTGGAGACGGGATACCAGTACGACCTGGTGACCAATGCTCTGCGTGACACCGGTCAGCTTGG
ACGGCTCAAGACCGGTATCGGGCTGTTGTGCTTCGTGATCGTGTTTCTGCAGGGAGTGACCCAGTTCTATCCGCTCGGCC
CGCACGGCATCTGGCCGCGCGTCGTCCACGGCATCACCGCTGCATCGGCGGTGGTCGCCGGCCTGTGTTGGCTGAGCTTC
TCGTGGCCGGGCCGCCGGGCGATGGCCGCGTTCGTGGTGTGGGCGGATGTCGCCCTGGCTGTCGGGGCCGCGCTGCTCTC
CGACCCCACCGCCAGAATTTGCGCGATCGTGTATTTGGGTCCGGTCGGCCTACTCCCCACCTTCTTCCTCAGTAGGCGGG
CACTGGTGGCGCACTGCGCGTTCGCCACGTCGCTGCTGGGGGCGGTGCTGGCGGTGAATGTGCTGTCCGGTGGGGCGCGG
ATGTTTGAACAGTTCTTTTACGCGGCTCCGGTGATCTCGGCGATCGTGTTGGTGCCCGCCGTCATCCAATTGGTTCTGGA
GGGAGGCCGCGACTCGATTCTGTCCGCGGCATTGGCTGCCGACAGGGACCCGCTTACCGGTCTGTTGAACCGGCGGGGTG
TGACCTCCGCAATGGACCTGCTGCATCGGGGCCGCCTGGACGCCATCGACATCGTCGTGGTGCTGATGGATGTGGACGGG
CTCAAAGAACTCAACGACACCCACGGCCACGGCGCCGGCGATATGACTCTCAAGGCGGTGGCAGACATGCTCAAGGCCCG
GACTCGGGTCGGTGAGATCGCGGCGCGTTTCGGCGGCGATGAGTTTCTGGTGGTCGCGTTTCCGGGCCGCGGGGAGGACA
TCGAATCGACCATTCGGCGCGTGAGTGCACCGCGAGCCGGTATCGACTACTGGACCGTCAGTGTGGGAGCCGCATGGCAG
TCACGGACCGGAAACAAGGTCGACCTGGAATCGCTTGTGCAGCAAGCCGACCATGCGCTGTACGAGGCCAAGAAGACCCG
CGGAATGCTGGACCCGCAGCGCTGA

Upstream 100 bases:

>100_bases
CCTTGCGTCCATGTTTCGTCGTCATGACGCCACTATCGGCGTGTGAACTTATGCGCGAAAGGCACCCGCTCACGGTGATT
GCAAGGTCCATAATTCCGGT

Downstream 100 bases:

>100_bases
GGGTGCGAGTCAGCCGACGGGTGCGGCATAGGTCTGCCGACCGGCCAGGTAGGTGGCGCGCACCGAGATATCGCGCAGTG
CCTGCGGGTCTACCGCGTGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 354; Mature: 354

Protein sequence:

>354_residues
MQNPPYVETGYQYDLVTNALRDTGQLGRLKTGIGLLCFVIVFLQGVTQFYPLGPHGIWPRVVHGITAASAVVAGLCWLSF
SWPGRRAMAAFVVWADVALAVGAALLSDPTARICAIVYLGPVGLLPTFFLSRRALVAHCAFATSLLGAVLAVNVLSGGAR
MFEQFFYAAPVISAIVLVPAVIQLVLEGGRDSILSAALAADRDPLTGLLNRRGVTSAMDLLHRGRLDAIDIVVVLMDVDG
LKELNDTHGHGAGDMTLKAVADMLKARTRVGEIAARFGGDEFLVVAFPGRGEDIESTIRRVSAPRAGIDYWTVSVGAAWQ
SRTGNKVDLESLVQQADHALYEAKKTRGMLDPQR

Sequences:

>Translated_354_residues
MQNPPYVETGYQYDLVTNALRDTGQLGRLKTGIGLLCFVIVFLQGVTQFYPLGPHGIWPRVVHGITAASAVVAGLCWLSF
SWPGRRAMAAFVVWADVALAVGAALLSDPTARICAIVYLGPVGLLPTFFLSRRALVAHCAFATSLLGAVLAVNVLSGGAR
MFEQFFYAAPVISAIVLVPAVIQLVLEGGRDSILSAALAADRDPLTGLLNRRGVTSAMDLLHRGRLDAIDIVVVLMDVDG
LKELNDTHGHGAGDMTLKAVADMLKARTRVGEIAARFGGDEFLVVAFPGRGEDIESTIRRVSAPRAGIDYWTVSVGAAWQ
SRTGNKVDLESLVQQADHALYEAKKTRGMLDPQR
>Mature_354_residues
MQNPPYVETGYQYDLVTNALRDTGQLGRLKTGIGLLCFVIVFLQGVTQFYPLGPHGIWPRVVHGITAASAVVAGLCWLSF
SWPGRRAMAAFVVWADVALAVGAALLSDPTARICAIVYLGPVGLLPTFFLSRRALVAHCAFATSLLGAVLAVNVLSGGAR
MFEQFFYAAPVISAIVLVPAVIQLVLEGGRDSILSAALAADRDPLTGLLNRRGVTSAMDLLHRGRLDAIDIVVVLMDVDG
LKELNDTHGHGAGDMTLKAVADMLKARTRVGEIAARFGGDEFLVVAFPGRGEDIESTIRRVSAPRAGIDYWTVSVGAAWQ
SRTGNKVDLESLVQQADHALYEAKKTRGMLDPQR

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=193, Percent_Identity=33.6787564766839, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI87081977, Length=230, Percent_Identity=29.1304347826087, Blast_Score=76, Evalue=4e-15,
Organism=Escherichia coli, GI1787262, Length=157, Percent_Identity=31.2101910828025, Blast_Score=75, Evalue=8e-15,
Organism=Escherichia coli, GI145693134, Length=154, Percent_Identity=35.0649350649351, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI1787802, Length=301, Percent_Identity=25.9136212624585, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1788956, Length=178, Percent_Identity=30.3370786516854, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI1787816, Length=158, Percent_Identity=29.746835443038, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI1786584, Length=154, Percent_Identity=29.8701298701299, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787541, Length=199, Percent_Identity=29.6482412060301, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656 [H]

Pfam domain/function: PF00990 GGDEF; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 37907; Mature: 37907

Theoretical pI: Translated: 7.99; Mature: 7.99

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQNPPYVETGYQYDLVTNALRDTGQLGRLKTGIGLLCFVIVFLQGVTQFYPLGPHGIWPR
CCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
VVHGITAASAVVAGLCWLSFSWPGRRAMAAFVVWADVALAVGAALLSDPTARICAIVYLG
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHC
PVGLLPTFFLSRRALVAHCAFATSLLGAVLAVNVLSGGARMFEQFFYAAPVISAIVLVPA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VIQLVLEGGRDSILSAALAADRDPLTGLLNRRGVTSAMDLLHRGRLDAIDIVVVLMDVDG
HHHHHHHCCHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHCCCC
LKELNDTHGHGAGDMTLKAVADMLKARTRVGEIAARFGGDEFLVVAFPGRGEDIESTIRR
HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHH
VSAPRAGIDYWTVSVGAAWQSRTGNKVDLESLVQQADHALYEAKKTRGMLDPQR
HCCCCCCCCEEEEEECCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MQNPPYVETGYQYDLVTNALRDTGQLGRLKTGIGLLCFVIVFLQGVTQFYPLGPHGIWPR
CCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
VVHGITAASAVVAGLCWLSFSWPGRRAMAAFVVWADVALAVGAALLSDPTARICAIVYLG
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHC
PVGLLPTFFLSRRALVAHCAFATSLLGAVLAVNVLSGGARMFEQFFYAAPVISAIVLVPA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VIQLVLEGGRDSILSAALAADRDPLTGLLNRRGVTSAMDLLHRGRLDAIDIVVVLMDVDG
HHHHHHHCCHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHCCCC
LKELNDTHGHGAGDMTLKAVADMLKARTRVGEIAARFGGDEFLVVAFPGRGEDIESTIRR
HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHH
VSAPRAGIDYWTVSVGAAWQSRTGNKVDLESLVQQADHALYEAKKTRGMLDPQR
HCCCCCCCCEEEEEECCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]