Definition | Mycobacterium abscessus ATCC 19977 chromosome chromosome 1, complete sequence. |
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Accession | NC_010397 |
Length | 5,067,172 |
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The map label for this gene is 169628894
Identifier: 169628894
GI number: 169628894
Start: 1809368
End: 1810741
Strand: Direct
Name: 169628894
Synonym: MAB_1805
Alternate gene names: NA
Gene position: 1809368-1810741 (Clockwise)
Preceding gene: 169628893
Following gene: 169628895
Centisome position: 35.71
GC content: 62.37
Gene sequence:
>1374_bases ATGGCCGTCCTACGCGCGAATGTTGAGTTCGCGAAGCGGATTTTCCAGGACCGCGTCGGCAACGACTACGTGTACGGCGG CAACTGGAATCCGTTCAACCTCAAGGTCGGTACCGACTGCTCCGGTCTGGTCATTGACATCTGCGACGCTGTGCGCAACG GGACCGCGATGGCCTGGACCCGGCATGGGATGTCCACCGAGAGCTGGCGTCCGATCGAGGTAGGTCAGACCGGAACGATC TTCAACACCATATGCGTGGCGTCGCCGAATGACTTCCCGGCTGATGCTGCGGTGAAGATCGCCATCCATCACGGCCCCGG CGGTGGGGCGAACAGTCACATGTGGTGTGAGGTTGAGGGAATCCGCATGGAGTCCAACGGCTCCGATGGGTGTGTGACCG GGAACCAGGCGCGGTCCGTGTACGACACGAGCTATGCGAACGACTGGCACTACCTGCCCGGACCCATCACAGGCCAGGTA GGTGTCGATCCCGCAGGAGTGCTGGCACGTGCCACCGGGCTAAGTGTCGCGAGGGCTTCGCAGATCCTACCCGCGGTGTC GGACGGGCTCAAGGCTAGTCAGTGCACGAACGTCAATCGGATCGCGATGTGGCTGGCGCAGGTCGGCCACGAGTCAGCCG GCTTCAATGCCACCGAAGAGTATGCCTCCGGTGCCGCCTATGAAGGGCGTGCAGATCTGGGTAACACCCAACCCGGGGAT GGGGTGCGGTTCAAGGGCCGCAGCTGGATTCAGATCACCGGCCGCAACAACTACGCAGCGTTCTCGCGGTGGTGTTCGGG TAAAGGACTCGTTCTGTCGCCAACGGAATTCGTTGATAACCCGAACCGACTGGCCGAACTGCGGTGGGCCGGTATAGGTG CGGCTTGGTACTGGACGGTCGCCCGCCCGGACATCAACGCCCTGTCGGATCGGCAGGACTTAGAGACCGTCACGCGCCGA ATCAACGGCGGCACCAACGGCTTGGCTGATCGTCGCGACCGATACAACCGCGCCCTACTCCAGGGCGATGCGCTTCTGCA ACTACTCACTGAACCGCTGGACCCGATTGAGGAGCTACTGATGTCAGACCTTCAGGTCGAATCCCTATCCATCTACGCCA CCCCAGGTGAGCCGTTGATCCCGATTGTTCGCATGGTGCAGGCCATCGACGCCGCGGAGCACCGCAAGCTCGTCGAGGAC TGGGCGCGCACCGGGGATGCAGACGCACTATCCCGTATCGCCCGCACCGCGGCGGGGCAAGGGAAGTTCCGTGACGCCGC CACCATCGCACACGCCAAAGCCGTGCTCGCTGACATTGAAGCCACTAACCCTGCAGTCCTGCAGGAGTTCATCTCTCAGA AGGGACAATCATGA
Upstream 100 bases:
>100_bases GCGGGTCGACCAGGGCTCGATCCCCGGATCGGAGGCATCTAGTGAATTGGTTGCGCCGCAAGATCAATGAGTGGCTGGCC GCGATCTGGTGGTCGTACTA
Downstream 100 bases:
>100_bases CCGCCCAGATTCGCAAGTGGTACTACCTCATCGGCGCACTGGTGACAGCGCTCGTGCCGATTCTGGTGACCTCCGGTGTC GTCAGTGACACCCAGGGCAA
Product: bacteriophage protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 457; Mature: 456
Protein sequence:
>457_residues MAVLRANVEFAKRIFQDRVGNDYVYGGNWNPFNLKVGTDCSGLVIDICDAVRNGTAMAWTRHGMSTESWRPIEVGQTGTI FNTICVASPNDFPADAAVKIAIHHGPGGGANSHMWCEVEGIRMESNGSDGCVTGNQARSVYDTSYANDWHYLPGPITGQV GVDPAGVLARATGLSVARASQILPAVSDGLKASQCTNVNRIAMWLAQVGHESAGFNATEEYASGAAYEGRADLGNTQPGD GVRFKGRSWIQITGRNNYAAFSRWCSGKGLVLSPTEFVDNPNRLAELRWAGIGAAWYWTVARPDINALSDRQDLETVTRR INGGTNGLADRRDRYNRALLQGDALLQLLTEPLDPIEELLMSDLQVESLSIYATPGEPLIPIVRMVQAIDAAEHRKLVED WARTGDADALSRIARTAAGQGKFRDAATIAHAKAVLADIEATNPAVLQEFISQKGQS
Sequences:
>Translated_457_residues MAVLRANVEFAKRIFQDRVGNDYVYGGNWNPFNLKVGTDCSGLVIDICDAVRNGTAMAWTRHGMSTESWRPIEVGQTGTI FNTICVASPNDFPADAAVKIAIHHGPGGGANSHMWCEVEGIRMESNGSDGCVTGNQARSVYDTSYANDWHYLPGPITGQV GVDPAGVLARATGLSVARASQILPAVSDGLKASQCTNVNRIAMWLAQVGHESAGFNATEEYASGAAYEGRADLGNTQPGD GVRFKGRSWIQITGRNNYAAFSRWCSGKGLVLSPTEFVDNPNRLAELRWAGIGAAWYWTVARPDINALSDRQDLETVTRR INGGTNGLADRRDRYNRALLQGDALLQLLTEPLDPIEELLMSDLQVESLSIYATPGEPLIPIVRMVQAIDAAEHRKLVED WARTGDADALSRIARTAAGQGKFRDAATIAHAKAVLADIEATNPAVLQEFISQKGQS >Mature_456_residues AVLRANVEFAKRIFQDRVGNDYVYGGNWNPFNLKVGTDCSGLVIDICDAVRNGTAMAWTRHGMSTESWRPIEVGQTGTIF NTICVASPNDFPADAAVKIAIHHGPGGGANSHMWCEVEGIRMESNGSDGCVTGNQARSVYDTSYANDWHYLPGPITGQVG VDPAGVLARATGLSVARASQILPAVSDGLKASQCTNVNRIAMWLAQVGHESAGFNATEEYASGAAYEGRADLGNTQPGDG VRFKGRSWIQITGRNNYAAFSRWCSGKGLVLSPTEFVDNPNRLAELRWAGIGAAWYWTVARPDINALSDRQDLETVTRRI NGGTNGLADRRDRYNRALLQGDALLQLLTEPLDPIEELLMSDLQVESLSIYATPGEPLIPIVRMVQAIDAAEHRKLVEDW ARTGDADALSRIARTAAGQGKFRDAATIAHAKAVLADIEATNPAVLQEFISQKGQS
Specific function: Unknown
COG id: COG3179
COG function: function code R; Predicted chitinase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To phage D29 and phage L5 gp10 [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000726 [H]
Pfam domain/function: PF00182 Glyco_hydro_19 [H]
EC number: NA
Molecular weight: Translated: 49330; Mature: 49199
Theoretical pI: Translated: 5.47; Mature: 5.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAVLRANVEFAKRIFQDRVGNDYVYGGNWNPFNLKVGTDCSGLVIDICDAVRNGTAMAWT CCEEECCHHHHHHHHHHHCCCCEEECCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEE RHGMSTESWRPIEVGQTGTIFNTICVASPNDFPADAAVKIAIHHGPGGGANSHMWCEVEG ECCCCCCCCCCEECCCCCCEEEEEEEECCCCCCCCCEEEEEEEECCCCCCCCEEEEEEEE IRMESNGSDGCVTGNQARSVYDTSYANDWHYLPGPITGQVGVDPAGVLARATGLSVARAS EEEECCCCCCCEECCCCCCEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHH QILPAVSDGLKASQCTNVNRIAMWLAQVGHESAGFNATEEYASGAAYEGRADLGNTQPGD HHHHHHHCCCCHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCC GVRFKGRSWIQITGRNNYAAFSRWCSGKGLVLSPTEFVDNPNRLAELRWAGIGAAWYWTV CEEECCCCEEEEECCCCHHHHHHHCCCCCEEECCHHHHCCCCHHHHHEEECCCEEEEEEE ARPDINALSDRQDLETVTRRINGGTNGLADRRDRYNRALLQGDALLQLLTEPLDPIEELL ECCCCHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH MSDLQVESLSIYATPGEPLIPIVRMVQAIDAAEHRKLVEDWARTGDADALSRIARTAAGQ HHCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC GKFRDAATIAHAKAVLADIEATNPAVLQEFISQKGQS CCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCC >Mature Secondary Structure AVLRANVEFAKRIFQDRVGNDYVYGGNWNPFNLKVGTDCSGLVIDICDAVRNGTAMAWT CEEECCHHHHHHHHHHHCCCCEEECCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEE RHGMSTESWRPIEVGQTGTIFNTICVASPNDFPADAAVKIAIHHGPGGGANSHMWCEVEG ECCCCCCCCCCEECCCCCCEEEEEEEECCCCCCCCCEEEEEEEECCCCCCCCEEEEEEEE IRMESNGSDGCVTGNQARSVYDTSYANDWHYLPGPITGQVGVDPAGVLARATGLSVARAS EEEECCCCCCCEECCCCCCEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHH QILPAVSDGLKASQCTNVNRIAMWLAQVGHESAGFNATEEYASGAAYEGRADLGNTQPGD HHHHHHHCCCCHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCC GVRFKGRSWIQITGRNNYAAFSRWCSGKGLVLSPTEFVDNPNRLAELRWAGIGAAWYWTV CEEECCCCEEEEECCCCHHHHHHHCCCCCEEECCHHHHCCCCHHHHHEEECCCEEEEEEE ARPDINALSDRQDLETVTRRINGGTNGLADRRDRYNRALLQGDALLQLLTEPLDPIEELL ECCCCHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH MSDLQVESLSIYATPGEPLIPIVRMVQAIDAAEHRKLVEDWARTGDADALSRIARTAAGQ HHCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC GKFRDAATIAHAKAVLADIEATNPAVLQEFISQKGQS CCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]