| Definition | Mycobacterium abscessus ATCC 19977 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010397 |
| Length | 5,067,172 |
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The map label for this gene is dnaG [H]
Identifier: 169628798
GI number: 169628798
Start: 1736970
End: 1738874
Strand: Direct
Name: dnaG [H]
Synonym: MAB_1708
Alternate gene names: 169628798
Gene position: 1736970-1738874 (Clockwise)
Preceding gene: 169628797
Following gene: 169628802
Centisome position: 34.28
GC content: 67.24
Gene sequence:
>1905_bases ATGGCCGGACGTATTCCTGATCGCGACATCGCGGCGATCCGTGAGCGCACCCGGATCGAGGACATCGTCGGTGACTACGT CCAGCTGAAACGCGCGGGTGCGGACTCGCTCAAGGGGCTGTGCCCGTTCCACGACGAGAAGTCCCCGTCGTTTCACGTAC GGCCCAATCACGGGCACTTCCACTGCTTCGGCTGCGGCGAGGGCGGCGACGCCTACACCTTCATCCAGAAGATCGAGCAC ATCACCTTTGTGGAGGCCGTCGAACGGCTGGCCGATCGCATCGGCTACACCATCAACTACGAGGGTGGCGGCACCGCGGC ACAACGTGACCGCGGCACCCGGGCCCGGCTCGTCGCCGCCAATGCCGCCGCGCAGGAGTTCTACGCCGCCGCACTGGATT CCCCCGAGGCGGCCCCGGCGCGTCAATATCTGACCGAGCGCAACTTCGATGGTGCCGCCGCCAAACAATATGGTTGCGGC TTCGCGCCGTCCGGCTGGGACACCCTGACAAAGCATTTGATGCGCAAGGGCTTCGAATTCAAGGAGCTGGAGGCCGCGGG GCTGTCGCGGGAGGGGCGCCGCGGGCCGATGGACCGCTTCCACCGGCGGCTGCTGTGGCCGATCCGTGCCAGCAGCGGCG AGGTGATCGGCTTCGGCGCGCGCAAGATCTTCGACGACGACACCATGCCCGGCAAGTACGTCAACACCCCGGAAACCATG TTGTACAAGAAGTCGTCGGTGTTGTTCGGTCTGGATCTGGCCAAACGCGATATCGCCAAGGGCCATCAGGCCGTGGTTGT GGAGGGCTACACCGATGTGATGGCCATGCACCTGGCCGGGGTGACCACGGCCGTGGCGTCCTGTGGCACCGCCTTCGGCG ACGAGCATCTGTCGATGCTGCGGCGCCTGATGATGGACGACTCGTATTTCCGTGGCGAGCTCATCTACGTGTTCGACGGC GATGCCGCCGGTCAGGCCGCGGCGCTGAAAGCCTTTGAAGGCGAGCAGAACCTGGCAGGGCAGTCATTCGTGGCGGTGGC TCCGGACGGCATGGATCCGTGCGATCTGCGGCTCAAATCGGGGGAGGGGGCGCTGCGGGATCTGGTCGCGCGCCGAATCC CGCTTTTCGCCTTCGCGATTCGGTCGGCGCTGGCGGAGTCCGATCTGGAGATCGCGGAGGGCCGCGTGGACGCGCTGCGC CGGTGCGTGCCGATGGTCGCCAAGATCAAGGACCCCACGCTGCGCGACGAGTACGCCCGTCAGCTTGCCGGCTGGGTCGG CTGGGATGACGTGGCCCAGGTGCTGGCGCGGGTGCGTGAGGAGGCCGGCAAGGCGGCCAAGGGCGGCTCTGTGTCCGCGG ATCGTCGTCCCCGTGGCACCGAGACGGCGGCGGCACCCAAGGTGTCGATGCCCGATCCCAAGGACCCCACGCTGTGGCCG CAGCGCGAAGCTCTCAAGGCCGCGTTGCAGTTCCCGGCCTTCGCCGGTCCGGTGTTCGACTCGCTGACCACCGACAGCTT CACCCACCCCGGGTATGTGGCGGTGCGCACCGCGATCGAGGTCGCCGGCGGTACCGCCGCGGGGATCGTCGGTGCGGAGT GGATTGACGTGGTCCGGCGACAGGCGGCAAGTCCGCACGTGGTGACGCTGATCAACGCCCTGACCGCCGAGGTCATCCAG GTTGATAGTGACGAGCGGTTGCCCCGGTACATCGGTTCGGTGCTGGCCAAGCTGCAAGAGGTGTGGGTCGGTCGGCAGGT GGCCGAGGTGAAGTCGAAGCTGCAGCGGATGTCGCCGGTGGACAACGCCGACGAGTACCACGCGCTGTTCGGCGATCTGG TGGCCCTGGAGGCGTACCGGCGCAGCCTGCTGGAGCAGGTCAGCGGCGACGATCTCTCGGTCTGA
Upstream 100 bases:
>100_bases ACCAGATCGCGTCCTACACCGAGAGTCGTCTGGAGCGTGTCGACCGCGATAGCCTGGGTGTTCAGGCCAGCTGGGGGTAG GGCGGCATAGACTGACCCAA
Downstream 100 bases:
>100_bases CCGGCCCCTACTTCTTGTCGAGCTGCGGCTCGGGCTCCAAGATCATGGTCGTCTCGTCGATGGGTGTGAGTTCGACCATG TGGGGGTCCGGGGACAGCGA
Product: DNA primase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 634; Mature: 633
Protein sequence:
>634_residues MAGRIPDRDIAAIRERTRIEDIVGDYVQLKRAGADSLKGLCPFHDEKSPSFHVRPNHGHFHCFGCGEGGDAYTFIQKIEH ITFVEAVERLADRIGYTINYEGGGTAAQRDRGTRARLVAANAAAQEFYAAALDSPEAAPARQYLTERNFDGAAAKQYGCG FAPSGWDTLTKHLMRKGFEFKELEAAGLSREGRRGPMDRFHRRLLWPIRASSGEVIGFGARKIFDDDTMPGKYVNTPETM LYKKSSVLFGLDLAKRDIAKGHQAVVVEGYTDVMAMHLAGVTTAVASCGTAFGDEHLSMLRRLMMDDSYFRGELIYVFDG DAAGQAAALKAFEGEQNLAGQSFVAVAPDGMDPCDLRLKSGEGALRDLVARRIPLFAFAIRSALAESDLEIAEGRVDALR RCVPMVAKIKDPTLRDEYARQLAGWVGWDDVAQVLARVREEAGKAAKGGSVSADRRPRGTETAAAPKVSMPDPKDPTLWP QREALKAALQFPAFAGPVFDSLTTDSFTHPGYVAVRTAIEVAGGTAAGIVGAEWIDVVRRQAASPHVVTLINALTAEVIQ VDSDERLPRYIGSVLAKLQEVWVGRQVAEVKSKLQRMSPVDNADEYHALFGDLVALEAYRRSLLEQVSGDDLSV
Sequences:
>Translated_634_residues MAGRIPDRDIAAIRERTRIEDIVGDYVQLKRAGADSLKGLCPFHDEKSPSFHVRPNHGHFHCFGCGEGGDAYTFIQKIEH ITFVEAVERLADRIGYTINYEGGGTAAQRDRGTRARLVAANAAAQEFYAAALDSPEAAPARQYLTERNFDGAAAKQYGCG FAPSGWDTLTKHLMRKGFEFKELEAAGLSREGRRGPMDRFHRRLLWPIRASSGEVIGFGARKIFDDDTMPGKYVNTPETM LYKKSSVLFGLDLAKRDIAKGHQAVVVEGYTDVMAMHLAGVTTAVASCGTAFGDEHLSMLRRLMMDDSYFRGELIYVFDG DAAGQAAALKAFEGEQNLAGQSFVAVAPDGMDPCDLRLKSGEGALRDLVARRIPLFAFAIRSALAESDLEIAEGRVDALR RCVPMVAKIKDPTLRDEYARQLAGWVGWDDVAQVLARVREEAGKAAKGGSVSADRRPRGTETAAAPKVSMPDPKDPTLWP QREALKAALQFPAFAGPVFDSLTTDSFTHPGYVAVRTAIEVAGGTAAGIVGAEWIDVVRRQAASPHVVTLINALTAEVIQ VDSDERLPRYIGSVLAKLQEVWVGRQVAEVKSKLQRMSPVDNADEYHALFGDLVALEAYRRSLLEQVSGDDLSV >Mature_633_residues AGRIPDRDIAAIRERTRIEDIVGDYVQLKRAGADSLKGLCPFHDEKSPSFHVRPNHGHFHCFGCGEGGDAYTFIQKIEHI TFVEAVERLADRIGYTINYEGGGTAAQRDRGTRARLVAANAAAQEFYAAALDSPEAAPARQYLTERNFDGAAAKQYGCGF APSGWDTLTKHLMRKGFEFKELEAAGLSREGRRGPMDRFHRRLLWPIRASSGEVIGFGARKIFDDDTMPGKYVNTPETML YKKSSVLFGLDLAKRDIAKGHQAVVVEGYTDVMAMHLAGVTTAVASCGTAFGDEHLSMLRRLMMDDSYFRGELIYVFDGD AAGQAAALKAFEGEQNLAGQSFVAVAPDGMDPCDLRLKSGEGALRDLVARRIPLFAFAIRSALAESDLEIAEGRVDALRR CVPMVAKIKDPTLRDEYARQLAGWVGWDDVAQVLARVREEAGKAAKGGSVSADRRPRGTETAAAPKVSMPDPKDPTLWPQ REALKAALQFPAFAGPVFDSLTTDSFTHPGYVAVRTAIEVAGGTAAGIVGAEWIDVVRRQAASPHVVTLINALTAEVIQV DSDERLPRYIGSVLAKLQEVWVGRQVAEVKSKLQRMSPVDNADEYHALFGDLVALEAYRRSLLEQVSGDDLSV
Specific function: DNA primase is the polymerase that synthesizes small RNA primers for the Okazaki fragments on both template strands at replication forks during chromosomal DNA synthesis [H]
COG id: COG0358
COG function: function code L; DNA primase (bacterial type)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 Toprim domain [H]
Homologues:
Organism=Escherichia coli, GI1789447, Length=594, Percent_Identity=30.6397306397306, Blast_Score=258, Evalue=9e-70,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013264 - InterPro: IPR019475 - InterPro: IPR006295 - InterPro: IPR013173 - InterPro: IPR006171 - InterPro: IPR002694 [H]
Pfam domain/function: PF10410 DnaB_bind; PF08278 DnaG_DnaB_bind; PF01751 Toprim; PF08275 Toprim_N; PF01807 zf-CHC2 [H]
EC number: 2.7.7.-
Molecular weight: Translated: 69135; Mature: 69004
Theoretical pI: Translated: 6.41; Mature: 6.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAGRIPDRDIAAIRERTRIEDIVGDYVQLKRAGADSLKGLCPFHDEKSPSFHVRPNHGHF CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCEEECCCCCEE HCFGCGEGGDAYTFIQKIEHITFVEAVERLADRIGYTINYEGGGTAAQRDRGTRARLVAA EEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHCCCCCEEEEEH NAAAQEFYAAALDSPEAAPARQYLTERNFDGAAAKQYGCGFAPSGWDTLTKHLMRKGFEF HHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHCCCCCCCCCHHHHHHHHHHCCCCH KELEAAGLSREGRRGPMDRFHRRLLWPIRASSGEVIGFGARKIFDDDTMPGKYVNTPETM HHHHHHCCCCCCCCCCHHHHHHHHCCCEECCCCCEEEECCHHHCCCCCCCCCCCCCCHHH LYKKSSVLFGLDLAKRDIAKGHQAVVVEGYTDVMAMHLAGVTTAVASCGTAFGDEHLSML HEECCCEEEEHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH RRLMMDDSYFRGELIYVFDGDAAGQAAALKAFEGEQNLAGQSFVAVAPDGMDPCDLRLKS HHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHCCCCCCCCCEEEEECCCCCCHHCEEEEC GEGALRDLVARRIPLFAFAIRSALAESDLEIAEGRVDALRRCVPMVAKIKDPTLRDEYAR CCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH QLAGWVGWDDVAQVLARVREEAGKAAKGGSVSADRRPRGTETAAAPKVSMPDPKDPTLWP HHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC QREALKAALQFPAFAGPVFDSLTTDSFTHPGYVAVRTAIEVAGGTAAGIVGAEWIDVVRR HHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHH QAASPHVVTLINALTAEVIQVDSDERLPRYIGSVLAKLQEVWVGRQVAEVKSKLQRMSPV HCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC DNADEYHALFGDLVALEAYRRSLLEQVSGDDLSV CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure AGRIPDRDIAAIRERTRIEDIVGDYVQLKRAGADSLKGLCPFHDEKSPSFHVRPNHGHF CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCEEECCCCCEE HCFGCGEGGDAYTFIQKIEHITFVEAVERLADRIGYTINYEGGGTAAQRDRGTRARLVAA EEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHCCCCCEEEEEH NAAAQEFYAAALDSPEAAPARQYLTERNFDGAAAKQYGCGFAPSGWDTLTKHLMRKGFEF HHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHCCCCCCCCCHHHHHHHHHHCCCCH KELEAAGLSREGRRGPMDRFHRRLLWPIRASSGEVIGFGARKIFDDDTMPGKYVNTPETM HHHHHHCCCCCCCCCCHHHHHHHHCCCEECCCCCEEEECCHHHCCCCCCCCCCCCCCHHH LYKKSSVLFGLDLAKRDIAKGHQAVVVEGYTDVMAMHLAGVTTAVASCGTAFGDEHLSML HEECCCEEEEHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH RRLMMDDSYFRGELIYVFDGDAAGQAAALKAFEGEQNLAGQSFVAVAPDGMDPCDLRLKS HHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHCCCCCCCCCEEEEECCCCCCHHCEEEEC GEGALRDLVARRIPLFAFAIRSALAESDLEIAEGRVDALRRCVPMVAKIKDPTLRDEYAR CCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH QLAGWVGWDDVAQVLARVREEAGKAAKGGSVSADRRPRGTETAAAPKVSMPDPKDPTLWP HHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC QREALKAALQFPAFAGPVFDSLTTDSFTHPGYVAVRTAIEVAGGTAAGIVGAEWIDVVRR HHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHH QAASPHVVTLINALTAEVIQVDSDERLPRYIGSVLAKLQEVWVGRQVAEVKSKLQRMSPV HCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC DNADEYHALFGDLVALEAYRRSLLEQVSGDDLSV CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Transferring phosphorus-containing groups; Nucleotidyltransferases [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9422594 [H]