Click here to switch to the map view.

The map label for this gene is yidR [H]

Identifier: 16767096

GI number: 16767096

Start: 4010973

End: 4012199

Strand: Reverse

Name: yidR [H]

Synonym: STM3811

Alternate gene names: 16767096

Gene position: 4012199-4010973 (Counterclockwise)

Preceding gene: 16767097

Following gene: 228960701

Centisome position: 82.6

GC content: 58.11

Gene sequence:

>1227_bases
ATGAAACAAATCACTTTTACGCCGCGCCATCACCAGCTTACCAACACCAATACCTGGACACCTGACAGCCAGTGGCTGGT
CTTTGATGTACGGCCTTCAGGCGCGTCATTTACGGGCAAGACCATTGAGCGTGTCAATGTGCATACCGGCGACGTGGAGG
TGATTTATCGCGCTGTGCAGGGCGCGCATGTCGGTGTGGTGACGGTGCATCCTGCCGACAATCACTATGTGTTTATTCAT
GGCCCTGAAAACCCTGATGAGACGTGGCATTACGATTTCCACCACCGCCGGGGCGTTATTGCAACGCCGGGGGGCGTGAC
TAACCTCGATGCGATGGATATTACTGCGCCGTATACTCCCGGCGCGCTGCGCGGCGGCAGTCACGTCCATGTGTTTAGCC
CGAACGGCGAGCTGGTGAGTTTTACCTATAATGACCACGTTCTGCATGAGCGAGATCCGGCGCTGGATCTACGTAATGTC
GGCGTGGCCGTGCCGTATGGGCCGGTAACGGTACCGGTTCAGCATCCGCGCGAATACAGCGGTAGCTACTGGTGCGTACT
GGTTAGCCGCACGACGCCTGCGCCGAGACCTGGCAGCGATGACATTAACCGCGCCTATGAAGAGGGCTGGGTGGGCAACC
GCCAGATCGCCTTTATTGGCGATACGCTGTCGCTGACGGGCAAAAAAGTCCCGGAGCTGTTTATTGTCGATTTACCGTGT
CATGAAAACGGCTGGAAACAGGCAGGCGACACGCCGCTGACGGGAACCGAATCAACGATGCCATCGCCGCCGTTGGGCGT
AGTTCAGCGGCGTCTTACCTTTACTCACCAGCGTGTTTATCCTGGACTCACTAACGAACCACGCCACTGGGTCCGCAGTA
ATCCGCAGGCGACGGCGATCGCCTTTTTGATGCGGGACGATAACGGCGTAGCGCAACTGTGGCTGATATCGCCGCAGGGA
GGCGAGCCCCGGCAGTTAACGCATCATGCGACCGGCGTACAGTCAGCGTTTAACTGGCATCCGTCGGGTAAATGGCTGGG
ACTGGTGCTGGAAAACCGGATTGCCTGCTGCGACGCACAAAGTGGGAGGATCGACTTCTTAACCGCCAGGCACGACAACC
CGCCGTCTGCGGACGCCGTCGTTTTTTCACCGGATGGGCGACACGTCGCATGGATGGAAGAGGTGAAAGGGTTCCGTCAG
CTATGGGTGACGGAAACCGGGCGATAA

Upstream 100 bases:

>100_bases
TGGCGCCATCGGGCCTGGCTATCCCAACGATACGCTAAAGCCTGAAAGTGAAGCCCGTGTGCAGTATGATGACGAGCATC
GTCTCTTATCAGGACATCCC

Downstream 100 bases:

>100_bases
ATCAGGGAGGAGGCATCTTCGCCGGGGGGATGACGGCATTGGTCATTTTCGTCTCCTCCTCGCTTTTCTCTACGCGCGAT
CTTACCGAACTGTCTTTGCG

Product: cytoplasmic protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 408; Mature: 408

Protein sequence:

>408_residues
MKQITFTPRHHQLTNTNTWTPDSQWLVFDVRPSGASFTGKTIERVNVHTGDVEVIYRAVQGAHVGVVTVHPADNHYVFIH
GPENPDETWHYDFHHRRGVIATPGGVTNLDAMDITAPYTPGALRGGSHVHVFSPNGELVSFTYNDHVLHERDPALDLRNV
GVAVPYGPVTVPVQHPREYSGSYWCVLVSRTTPAPRPGSDDINRAYEEGWVGNRQIAFIGDTLSLTGKKVPELFIVDLPC
HENGWKQAGDTPLTGTESTMPSPPLGVVQRRLTFTHQRVYPGLTNEPRHWVRSNPQATAIAFLMRDDNGVAQLWLISPQG
GEPRQLTHHATGVQSAFNWHPSGKWLGLVLENRIACCDAQSGRIDFLTARHDNPPSADAVVFSPDGRHVAWMEEVKGFRQ
LWVTETGR

Sequences:

>Translated_408_residues
MKQITFTPRHHQLTNTNTWTPDSQWLVFDVRPSGASFTGKTIERVNVHTGDVEVIYRAVQGAHVGVVTVHPADNHYVFIH
GPENPDETWHYDFHHRRGVIATPGGVTNLDAMDITAPYTPGALRGGSHVHVFSPNGELVSFTYNDHVLHERDPALDLRNV
GVAVPYGPVTVPVQHPREYSGSYWCVLVSRTTPAPRPGSDDINRAYEEGWVGNRQIAFIGDTLSLTGKKVPELFIVDLPC
HENGWKQAGDTPLTGTESTMPSPPLGVVQRRLTFTHQRVYPGLTNEPRHWVRSNPQATAIAFLMRDDNGVAQLWLISPQG
GEPRQLTHHATGVQSAFNWHPSGKWLGLVLENRIACCDAQSGRIDFLTARHDNPPSADAVVFSPDGRHVAWMEEVKGFRQ
LWVTETGR
>Mature_408_residues
MKQITFTPRHHQLTNTNTWTPDSQWLVFDVRPSGASFTGKTIERVNVHTGDVEVIYRAVQGAHVGVVTVHPADNHYVFIH
GPENPDETWHYDFHHRRGVIATPGGVTNLDAMDITAPYTPGALRGGSHVHVFSPNGELVSFTYNDHVLHERDPALDLRNV
GVAVPYGPVTVPVQHPREYSGSYWCVLVSRTTPAPRPGSDDINRAYEEGWVGNRQIAFIGDTLSLTGKKVPELFIVDLPC
HENGWKQAGDTPLTGTESTMPSPPLGVVQRRLTFTHQRVYPGLTNEPRHWVRSNPQATAIAFLMRDDNGVAQLWLISPQG
GEPRQLTHHATGVQSAFNWHPSGKWLGLVLENRIACCDAQSGRIDFLTARHDNPPSADAVVFSPDGRHVAWMEEVKGFRQ
LWVTETGR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI308199520, Length=408, Percent_Identity=79.1666666666667, Blast_Score=674, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011042
- InterPro:   IPR022223 [H]

Pfam domain/function: PF12566 DUF3748 [H]

EC number: NA

Molecular weight: Translated: 45381; Mature: 45381

Theoretical pI: Translated: 6.85; Mature: 6.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQITFTPRHHQLTNTNTWTPDSQWLVFDVRPSGASFTGKTIERVNVHTGDVEVIYRAVQ
CCCEEECCCCCEECCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEEEECCCHHHHHHHHC
GAHVGVVTVHPADNHYVFIHGPENPDETWHYDFHHRRGVIATPGGVTNLDAMDITAPYTP
CCEEEEEEEECCCCCEEEEECCCCCCCCEEEEHHHCCCEEECCCCCCCCCEEEEECCCCC
GALRGGSHVHVFSPNGELVSFTYNDHVLHERDPALDLRNVGVAVPYGPVTVPVQHPREYS
CCCCCCCEEEEECCCCCEEEEEECCCEEECCCCCCCHHHCCEECCCCCEEEECCCCCCCC
GSYWCVLVSRTTPAPRPGSDDINRAYEEGWVGNRQIAFIGDTLSLTGKKVPELFIVDLPC
CCEEEEEEECCCCCCCCCCHHHHHHHHHCCCCCEEEEEEECEEEECCCCCCEEEEEEECC
HENGWKQAGDTPLTGTESTMPSPPLGVVQRRLTFTHQRVYPGLTNEPRHWVRSNPQATAI
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCEEE
AFLMRDDNGVAQLWLISPQGGEPRQLTHHATGVQSAFNWHPSGKWLGLVLENRIACCDAQ
EEEEECCCCEEEEEEECCCCCCCCCEEHHHHCHHHHEEECCCCCEEEEEECCCEEEECCC
SGRIDFLTARHDNPPSADAVVFSPDGRHVAWMEEVKGFRQLWVTETGR
CCCEEEEEECCCCCCCCCEEEECCCCCEEHHHHHHHHHHEEEEEECCC
>Mature Secondary Structure
MKQITFTPRHHQLTNTNTWTPDSQWLVFDVRPSGASFTGKTIERVNVHTGDVEVIYRAVQ
CCCEEECCCCCEECCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEEEECCCHHHHHHHHC
GAHVGVVTVHPADNHYVFIHGPENPDETWHYDFHHRRGVIATPGGVTNLDAMDITAPYTP
CCEEEEEEEECCCCCEEEEECCCCCCCCEEEEHHHCCCEEECCCCCCCCCEEEEECCCCC
GALRGGSHVHVFSPNGELVSFTYNDHVLHERDPALDLRNVGVAVPYGPVTVPVQHPREYS
CCCCCCCEEEEECCCCCEEEEEECCCEEECCCCCCCHHHCCEECCCCCEEEECCCCCCCC
GSYWCVLVSRTTPAPRPGSDDINRAYEEGWVGNRQIAFIGDTLSLTGKKVPELFIVDLPC
CCEEEEEEECCCCCCCCCCHHHHHHHHHCCCCCEEEEEEECEEEECCCCCCEEEEEEECC
HENGWKQAGDTPLTGTESTMPSPPLGVVQRRLTFTHQRVYPGLTNEPRHWVRSNPQATAI
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCEEE
AFLMRDDNGVAQLWLISPQGGEPRQLTHHATGVQSAFNWHPSGKWLGLVLENRIACCDAQ
EEEEECCCCEEEEEEECCCCCCCCCEEHHHHCHHHHEEECCCCCEEEEEECCCEEEECCC
SGRIDFLTARHDNPPSADAVVFSPDGRHVAWMEEVKGFRQLWVTETGR
CCCEEEEEECCCCCCCCCEEEECCCCCEEHHHHHHHHHHEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7686882; 9278503 [H]