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The map label for this gene is yiaF [H]

Identifier: 16766933

GI number: 16766933

Start: 3834711

End: 3835421

Strand: Reverse

Name: yiaF [H]

Synonym: STM3647

Alternate gene names: 16766933

Gene position: 3835421-3834711 (Counterclockwise)

Preceding gene: 16766937

Following gene: 16766930

Centisome position: 78.96

GC content: 55.13

Gene sequence:

>711_bases
ATGGCGACAGGTAAGTCCTGCTCTCGCTGGTTTGCGCCTGTTGTGGCGTTATTAATGGTGTTTAGCCTGAGCGGGTGTTT
TGATAAAGAAGGCGATCAGCGCAAAGCGTTTGTCGATTTCCTGCAGAATACAGCAATGCGTAGCGGAGAGCGTTTACCAA
CGCTGACGGCCGATCAGAAAAAACAGTTTGGTCCGTTCGTGTCTGATTACGCGATACTGTATGGCTACTCGCAGCAGGTA
AACCAGGCGATGGATTCCGGTCTGCGCCCGGTGGTCGATAGCGTTAACGCCATCCGCGTTCCGCAGGATTATATGACGCA
ACGCGAGCCGCTGCGGCAGGCAAATGGTTCGTTAGGCGTGCTGGCGCAACAGTTGCAGAATGCAAAACTGCAGGCTGATG
CCGCGCATGGCGCGTTAAAGCAGGCCGATGACCTGAAACCTGTGTTTGATCAGGTCTACAAAAAAGTAGTCACCGTGCCG
GCAGATGCTTTGCAGCCGCTGATCCCGGCGGCGCAGATCTTTACGCAGCAGTTGGTACAAGTGGGCGATTATATTGCGCA
ACAGGGCGAGCAGGTGAGCTTTGTCGCGAACGGCATTCAGTTCCCGACCTCACAGCAGGCCAGCCAATATAATGCGTTGA
TTGGGCCGTTGGCCTCGCAGCATCAGGCGTTTAATCAGGCCTGGACGGCGGCGGTAAACGCGACCCAGTAA

Upstream 100 bases:

>100_bases
GTGGAAAGGGTATCCTGCAAGCCTGACCTGGACTATCCTTGTAAGCCGTCAGGCACGCAGGTGTCGTTGTGCGCATTTTT
GGGTGAAAGGAGTATTAACA

Downstream 100 bases:

>100_bases
TGACAGTCTGCCCGATAAGCGCAAGCCAGCGCTTATCGGGCCTGTAGCGTTATCCCGCCGCTTGCGGATTGACGCAGTTC
TTCTCTATTTTTCCCTGCAG

Product: outer membrane lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 236; Mature: 235

Protein sequence:

>236_residues
MATGKSCSRWFAPVVALLMVFSLSGCFDKEGDQRKAFVDFLQNTAMRSGERLPTLTADQKKQFGPFVSDYAILYGYSQQV
NQAMDSGLRPVVDSVNAIRVPQDYMTQREPLRQANGSLGVLAQQLQNAKLQADAAHGALKQADDLKPVFDQVYKKVVTVP
ADALQPLIPAAQIFTQQLVQVGDYIAQQGEQVSFVANGIQFPTSQQASQYNALIGPLASQHQAFNQAWTAAVNATQ

Sequences:

>Translated_236_residues
MATGKSCSRWFAPVVALLMVFSLSGCFDKEGDQRKAFVDFLQNTAMRSGERLPTLTADQKKQFGPFVSDYAILYGYSQQV
NQAMDSGLRPVVDSVNAIRVPQDYMTQREPLRQANGSLGVLAQQLQNAKLQADAAHGALKQADDLKPVFDQVYKKVVTVP
ADALQPLIPAAQIFTQQLVQVGDYIAQQGEQVSFVANGIQFPTSQQASQYNALIGPLASQHQAFNQAWTAAVNATQ
>Mature_235_residues
ATGKSCSRWFAPVVALLMVFSLSGCFDKEGDQRKAFVDFLQNTAMRSGERLPTLTADQKKQFGPFVSDYAILYGYSQQVN
QAMDSGLRPVVDSVNAIRVPQDYMTQREPLRQANGSLGVLAQQLQNAKLQADAAHGALKQADDLKPVFDQVYKKVVTVPA
DALQPLIPAAQIFTQQLVQVGDYIAQQGEQVSFVANGIQFPTSQQASQYNALIGPLASQHQAFNQAWTAAVNATQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082290, Length=236, Percent_Identity=88.9830508474576, Blast_Score=433, Evalue=1e-123,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR021413 [H]

Pfam domain/function: PF11254 DUF3053 [H]

EC number: NA

Molecular weight: Translated: 25756; Mature: 25625

Theoretical pI: Translated: 7.41; Mature: 7.41

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATGKSCSRWFAPVVALLMVFSLSGCFDKEGDQRKAFVDFLQNTAMRSGERLPTLTADQK
CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHH
KQFGPFVSDYAILYGYSQQVNQAMDSGLRPVVDSVNAIRVPQDYMTQREPLRQANGSLGV
HHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHCHHHEECCHHHHHHHHHHHHCCCCHHH
LAQQLQNAKLQADAAHGALKQADDLKPVFDQVYKKVVTVPADALQPLIPAAQIFTQQLVQ
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
VGDYIAQQGEQVSFVANGIQFPTSQQASQYNALIGPLASQHQAFNQAWTAAVNATQ
HHHHHHHCCCEEHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
ATGKSCSRWFAPVVALLMVFSLSGCFDKEGDQRKAFVDFLQNTAMRSGERLPTLTADQK
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHH
KQFGPFVSDYAILYGYSQQVNQAMDSGLRPVVDSVNAIRVPQDYMTQREPLRQANGSLGV
HHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHCHHHEECCHHHHHHHHHHHHCCCCHHH
LAQQLQNAKLQADAAHGALKQADDLKPVFDQVYKKVVTVPADALQPLIPAAQIFTQQLVQ
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
VGDYIAQQGEQVSFVANGIQFPTSQQASQYNALIGPLASQHQAFNQAWTAAVNATQ
HHHHHHHCCCEEHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]