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The map label for this gene is ygeR [H]

Identifier: 16766339

GI number: 16766339

Start: 3197575

End: 3198333

Strand: Reverse

Name: ygeR [H]

Synonym: STM3038

Alternate gene names: 16766339

Gene position: 3198333-3197575 (Counterclockwise)

Preceding gene: 16766341

Following gene: 16766336

Centisome position: 65.84

GC content: 53.75

Gene sequence:

>759_bases
ATGGTTTTGAGCGCAGGACGCCTGAACAAAAATAGCCTGGGTATTGCGGTGCTGTTATGCACAGGGCTGCTGCTGGCGGG
GTGTTCCAGTAATTCCGGCTCAGGAACGTATTCCGGCTCCGTCTATACCGTTAAGCGCGGCGATACGTTGTATCGTATAT
CGCGCGCTACGGGAACCAGCGTGAAAGAACTGGCCCGACTGAATGGCATTTCTCCGCCTTATACTATTGAGGTGGGGCAG
CGAATTAAAGTGCGCGGCAGCGCAAAGAGTAGCACTTCAACACGCAAAACCAGCAATAAAACAGCAACAAAAACTGCTGC
GGTCAGACCGTCATCTTCGGTGCCAAAATCCTCCTGGCCGCCGGTGGGGCAGCGTTGTTGGGTATGGCCTGCTAACGGTA
AAGTGATTTTACCTTATTCCACCGCGGAGGGCGGAAATAAGGGGATCGATATTGCGGGCGCGCGCGGAACGCCTGTTTAT
GCGGCGGGAGCGGGTAAAGTTGTCTATGTCGGGAACCAGCTGCGCGGTTACGGCAATCTCATCATGATTAAGCACAATGA
AGATTACATTACGGCTTACGCTCATAATGACACCATGCTGGTTAATAATGGACAAAGCGTTAAAGCGGGGCAAAAAATCG
CTACGATGGGCAGCACGGATGCCGCATCCGTAAGACTACACTTCCAGATTCGCTACCGGGCGACGGCCATCGATCCGCTG
CGTTATCTGCCGCCGCAGGGGAGTAAACCGAAGTGCTGA

Upstream 100 bases:

>100_bases
ATTCGCGGCATCATCATCCACGCGGCCCCTTTCCGGCGTCAATGGATTGGGCATACGGCATTTGGCTGCTATCATAAGGC
GTCTGTCAATAGAGTGAGGA

Downstream 100 bases:

>100_bases
CGGCGAATTAATCGCCAGTCAGCCAGTAAGTCTCTTGCCAACCAGAGCGTAAGGTTTATAATGCTTTACGCATCTCAAAG
CGGGCGTAGTTCAATGGTAG

Product: metalloendopeptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 252; Mature: 252

Protein sequence:

>252_residues
MVLSAGRLNKNSLGIAVLLCTGLLLAGCSSNSGSGTYSGSVYTVKRGDTLYRISRATGTSVKELARLNGISPPYTIEVGQ
RIKVRGSAKSSTSTRKTSNKTATKTAAVRPSSSVPKSSWPPVGQRCWVWPANGKVILPYSTAEGGNKGIDIAGARGTPVY
AAGAGKVVYVGNQLRGYGNLIMIKHNEDYITAYAHNDTMLVNNGQSVKAGQKIATMGSTDAASVRLHFQIRYRATAIDPL
RYLPPQGSKPKC

Sequences:

>Translated_252_residues
MVLSAGRLNKNSLGIAVLLCTGLLLAGCSSNSGSGTYSGSVYTVKRGDTLYRISRATGTSVKELARLNGISPPYTIEVGQ
RIKVRGSAKSSTSTRKTSNKTATKTAAVRPSSSVPKSSWPPVGQRCWVWPANGKVILPYSTAEGGNKGIDIAGARGTPVY
AAGAGKVVYVGNQLRGYGNLIMIKHNEDYITAYAHNDTMLVNNGQSVKAGQKIATMGSTDAASVRLHFQIRYRATAIDPL
RYLPPQGSKPKC
>Mature_252_residues
MVLSAGRLNKNSLGIAVLLCTGLLLAGCSSNSGSGTYSGSVYTVKRGDTLYRISRATGTSVKELARLNGISPPYTIEVGQ
RIKVRGSAKSSTSTRKTSNKTATKTAAVRPSSSVPKSSWPPVGQRCWVWPANGKVILPYSTAEGGNKGIDIAGARGTPVY
AAGAGKVVYVGNQLRGYGNLIMIKHNEDYITAYAHNDTMLVNNGQSVKAGQKIATMGSTDAASVRLHFQIRYRATAIDPL
RYLPPQGSKPKC

Specific function: Unknown

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082174, Length=252, Percent_Identity=84.9206349206349, Blast_Score=437, Evalue=1e-124,
Organism=Escherichia coli, GI1789099, Length=118, Percent_Identity=66.1016949152542, Blast_Score=176, Evalue=1e-45,
Organism=Escherichia coli, GI87082297, Length=127, Percent_Identity=33.0708661417323, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 26653; Mature: 26653

Theoretical pI: Translated: 10.75; Mature: 10.75

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVLSAGRLNKNSLGIAVLLCTGLLLAGCSSNSGSGTYSGSVYTVKRGDTLYRISRATGTS
CEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEECCEEEEEECCCEEEEEECCCCCC
VKELARLNGISPPYTIEVGQRIKVRGSAKSSTSTRKTSNKTATKTAAVRPSSSVPKSSWP
HHHHHHHCCCCCCEEEECCCEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCC
PVGQRCWVWPANGKVILPYSTAEGGNKGIDIAGARGTPVYAAGAGKVVYVGNQLRGYGNL
CCCCEEEEEECCCEEEEEEECCCCCCCCEEEECCCCCEEEEECCCEEEEECCEECCCCCE
IMIKHNEDYITAYAHNDTMLVNNGQSVKAGQKIATMGSTDAASVRLHFQIRYRATAIDPL
EEEEECCCEEEEEECCCEEEEECCCCCCCCCEEEECCCCCCEEEEEEEEEEEEEEEECCH
RYLPPQGSKPKC
HHCCCCCCCCCC
>Mature Secondary Structure
MVLSAGRLNKNSLGIAVLLCTGLLLAGCSSNSGSGTYSGSVYTVKRGDTLYRISRATGTS
CEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEECCEEEEEECCCEEEEEECCCCCC
VKELARLNGISPPYTIEVGQRIKVRGSAKSSTSTRKTSNKTATKTAAVRPSSSVPKSSWP
HHHHHHHCCCCCCEEEECCCEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCC
PVGQRCWVWPANGKVILPYSTAEGGNKGIDIAGARGTPVYAAGAGKVVYVGNQLRGYGNL
CCCCEEEEEECCCEEEEEEECCCCCCCCEEEECCCCCEEEEECCCEEEEECCEECCCCCE
IMIKHNEDYITAYAHNDTMLVNNGQSVKAGQKIATMGSTDAASVRLHFQIRYRATAIDPL
EEEEECCCEEEEEECCCEEEEECCCCCCCCCEEEECCCCCCEEEEEEEEEEEEEEEECCH
RYLPPQGSKPKC
HHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]