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The map label for this gene is kduI [H]

Identifier: 16766320

GI number: 16766320

Start: 3178392

End: 3179228

Strand: Reverse

Name: kduI [H]

Synonym: STM3018

Alternate gene names: 16766320

Gene position: 3179228-3178392 (Counterclockwise)

Preceding gene: 16766321

Following gene: 16766319

Centisome position: 65.45

GC content: 51.49

Gene sequence:

>837_bases
GTGGACGTAAGGCAAAGTATCCATAGCGAGCACGCTAAAACGCTGGACACCCAGGCGCTGCGACGCGAGTTTTTAATAGA
AAATATTTTTGTCGCTGATGAATATACGATGGTCTACAGCCATATCGACCGTATTATTGTCGGCGGCATTATGCCCGTCA
GCCATCCCGTTGAAATCGGCGGAGAAGTAGGTAAACAGCTTGGCGTTTCCCGATTACTGGACCGCCGCGAGCTGGGCGTC
ATTAATATTGGCGGCGCGGGCGCCATTATCGTTGACGGGCAGCGCCATGACATTGGTCATCGTGATGCTCTGTATATTGG
TAAAGGGGCGAAAGAGCTGGTCTTCGTCAGCAATGAGGCGAGCAGACCGGCGAAGTTTTATTACAACTGCGCGCCAGCGC
ATACCGCTTATCCGACGAAAAAAGTGTCGCCTGCCGACGTTGCGCCCGTCACCTTAGGCGATAACCTCACCAGTAACCGT
CGCACTATCAATAAATATTTCGTACCGGATGTACTGGAAACCTGTCAGCTCAGTATGGGACTCACCGAACTGGCGCCCGG
CAATCTATGGAACACCATGCCATGCCATACCCATGAGCGCCGTATGGAAGTGTACCTCTATTTCAATATGGAAGAGGACA
GTTGCGTTTTCCATATGATGGGGCAGCCTCAGGAAACCCGTCATATTGTGATGCGTAATGAACAGGCGGTTATTTCCCCA
AGCTGGTCAATACATTCCGGCGTTGGCACCAAAGCCTATACGTTTGTTTGGGGCATGGTGGGAGAAAATCAGGTCTTCGA
TGACATGGATCACGTTGCGGTACAAGATCTGCGCTAG

Upstream 100 bases:

>100_bases
TGTTGAAAACCTTTATCCAGGCGACTATGATGCCGTTAAATAAATCAAAACAGTGTTTTGATTTTGTGCCATTGCGATCG
ATTTATCATTGGAGGGAAAA

Downstream 100 bases:

>100_bases
TCGCGACCGGTGATAACGCCTGTGCGTGACAGGCATGACAAAAATAAGGATTAACAATGATTTTGAATGCATTTTCTCTT
GAAGGTAAAGTCGCGGTTGT

Product: 5-keto-4-deoxyuronate isomerase

Products: NA

Alternate protein names: 5-keto-4-deoxyuronate isomerase; DKI isomerase [H]

Number of amino acids: Translated: 278; Mature: 278

Protein sequence:

>278_residues
MDVRQSIHSEHAKTLDTQALRREFLIENIFVADEYTMVYSHIDRIIVGGIMPVSHPVEIGGEVGKQLGVSRLLDRRELGV
INIGGAGAIIVDGQRHDIGHRDALYIGKGAKELVFVSNEASRPAKFYYNCAPAHTAYPTKKVSPADVAPVTLGDNLTSNR
RTINKYFVPDVLETCQLSMGLTELAPGNLWNTMPCHTHERRMEVYLYFNMEEDSCVFHMMGQPQETRHIVMRNEQAVISP
SWSIHSGVGTKAYTFVWGMVGENQVFDDMDHVAVQDLR

Sequences:

>Translated_278_residues
MDVRQSIHSEHAKTLDTQALRREFLIENIFVADEYTMVYSHIDRIIVGGIMPVSHPVEIGGEVGKQLGVSRLLDRRELGV
INIGGAGAIIVDGQRHDIGHRDALYIGKGAKELVFVSNEASRPAKFYYNCAPAHTAYPTKKVSPADVAPVTLGDNLTSNR
RTINKYFVPDVLETCQLSMGLTELAPGNLWNTMPCHTHERRMEVYLYFNMEEDSCVFHMMGQPQETRHIVMRNEQAVISP
SWSIHSGVGTKAYTFVWGMVGENQVFDDMDHVAVQDLR
>Mature_278_residues
MDVRQSIHSEHAKTLDTQALRREFLIENIFVADEYTMVYSHIDRIIVGGIMPVSHPVEIGGEVGKQLGVSRLLDRRELGV
INIGGAGAIIVDGQRHDIGHRDALYIGKGAKELVFVSNEASRPAKFYYNCAPAHTAYPTKKVSPADVAPVTLGDNLTSNR
RTINKYFVPDVLETCQLSMGLTELAPGNLWNTMPCHTHERRMEVYLYFNMEEDSCVFHMMGQPQETRHIVMRNEQAVISP
SWSIHSGVGTKAYTFVWGMVGENQVFDDMDHVAVQDLR

Specific function: Pectin degradation. [C]

COG id: COG3717

COG function: function code G; 5-keto 4-deoxyuronate isomerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the kduI family [H]

Homologues:

Organism=Escherichia coli, GI1789209, Length=278, Percent_Identity=85.6115107913669, Blast_Score=516, Evalue=1e-148,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR007045
- InterPro:   IPR021120 [H]

Pfam domain/function: PF04962 KduI [H]

EC number: =5.3.1.17 [H]

Molecular weight: Translated: 31201; Mature: 31201

Theoretical pI: Translated: 6.32; Mature: 6.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDVRQSIHSEHAKTLDTQALRREFLIENIFVADEYTMVYSHIDRIIVGGIMPVSHPVEIG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCHHHHHHHHHHHHHHCCCCCCCCCHHHH
GEVGKQLGVSRLLDRRELGVINIGGAGAIIVDGQRHDIGHRDALYIGKGAKELVFVSNEA
HHHHHHHHHHHHHHHHHCCEEEECCCCEEEECCCCCCCCCCCEEEECCCCCEEEEEECCC
SRPAKFYYNCAPAHTAYPTKKVSPADVAPVTLGDNLTSNRRTINKYFVPDVLETCQLSMG
CCCEEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHCHHHHHHHHHHCC
LTELAPGNLWNTMPCHTHERRMEVYLYFNMEEDSCVFHMMGQPQETRHIVMRNEQAVISP
HHHCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEECCCCCCCCEEEEECCEEEECC
SWSIHSGVGTKAYTFVWGMVGENQVFDDMDHVAVQDLR
CCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MDVRQSIHSEHAKTLDTQALRREFLIENIFVADEYTMVYSHIDRIIVGGIMPVSHPVEIG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCHHHHHHHHHHHHHHCCCCCCCCCHHHH
GEVGKQLGVSRLLDRRELGVINIGGAGAIIVDGQRHDIGHRDALYIGKGAKELVFVSNEA
HHHHHHHHHHHHHHHHHCCEEEECCCCEEEECCCCCCCCCCCEEEECCCCCEEEEEECCC
SRPAKFYYNCAPAHTAYPTKKVSPADVAPVTLGDNLTSNRRTINKYFVPDVLETCQLSMG
CCCEEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHCHHHHHHHHHHCC
LTELAPGNLWNTMPCHTHERRMEVYLYFNMEEDSCVFHMMGQPQETRHIVMRNEQAVISP
HHHCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEECCCCCCCCEEEEECCEEEECC
SWSIHSGVGTKAYTFVWGMVGENQVFDDMDHVAVQDLR
CCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA