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The map label for this gene is ppdA [H]

Identifier: 16766302

GI number: 16766302

Start: 3157362

End: 3157832

Strand: Reverse

Name: ppdA [H]

Synonym: STM3000

Alternate gene names: 16766302

Gene position: 3157832-3157362 (Counterclockwise)

Preceding gene: 16766303

Following gene: 16766301

Centisome position: 65.01

GC content: 56.05

Gene sequence:

>471_bases
ATGAAAAAACAACAGGGCTATACGCTCATTGAAACGGTGGTCGCGATGTCGCTCATTATCATTCTCAGCGCCACAGGACT
TTATGGCTGGCAACGCTGGCAGCAGCAACAGCGCCTGTGGCAAACCGCATGTCAGGTGCGGGATTACCTGCTGCAACTTC
GTGGGGACGCTCACTGGCATAACCGCGATCACATTCTTCGCGTGGTCAGCGAAGGCGGTTCATGGTGCTTTGTCAGCTCT
GTTGCTACGCAAACATCGTGTACGCCATCTTCCCCCTTTGTGTTTACGCCCGACTGGCGTGATGTCGTCCTTGCCGATAT
CACGCCGTCGTTAGCCTTCTTTGGCTTGCGCAATACGGCATGGGCAGGGCACATCGTACTGAAAAACGCTGCCGGAGAGT
GGCGTCTGGTCGTCTCCTCCTGGGGGCGAATCAGGCTATGCGAGCGTAACGAGGCCGCCACGTGTCAATAA

Upstream 100 bases:

>100_bases
ATTTTGCAACGCGCTGCAAGACATGAACTTTTTTCCGTAACGCGCCGAACAATCTGTATTTGGCGCTCGTTATTTTTCTT
CCGCCCGCCATACTGCCGAC

Downstream 100 bases:

>100_bases
CCACGCGGGGGTTCTCGCTACTGGAGGTTGTGCTGGCGATGGCGATCGGTTCCATTTTACTGCTTGGGTCCGCACGATTT
TTACCGGCGCTACAACGCGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 156; Mature: 156

Protein sequence:

>156_residues
MKKQQGYTLIETVVAMSLIIILSATGLYGWQRWQQQQRLWQTACQVRDYLLQLRGDAHWHNRDHILRVVSEGGSWCFVSS
VATQTSCTPSSPFVFTPDWRDVVLADITPSLAFFGLRNTAWAGHIVLKNAAGEWRLVVSSWGRIRLCERNEAATCQ

Sequences:

>Translated_156_residues
MKKQQGYTLIETVVAMSLIIILSATGLYGWQRWQQQQRLWQTACQVRDYLLQLRGDAHWHNRDHILRVVSEGGSWCFVSS
VATQTSCTPSSPFVFTPDWRDVVLADITPSLAFFGLRNTAWAGHIVLKNAAGEWRLVVSSWGRIRLCERNEAATCQ
>Mature_156_residues
MKKQQGYTLIETVVAMSLIIILSATGLYGWQRWQQQQRLWQTACQVRDYLLQLRGDAHWHNRDHILRVVSEGGSWCFVSS
VATQTSCTPSSPFVFTPDWRDVVLADITPSLAFFGLRNTAWAGHIVLKNAAGEWRLVVSSWGRIRLCERNEAATCQ

Specific function: Not yet known [H]

COG id: COG2165

COG function: function code NU; Type II secretory pathway, pseudopilin PulG

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789190, Length=155, Percent_Identity=65.8064516129032, Blast_Score=220, Evalue=4e-59,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012902
- InterPro:   IPR001120 [H]

Pfam domain/function: PF07963 N_methyl [H]

EC number: NA

Molecular weight: Translated: 17767; Mature: 17767

Theoretical pI: Translated: 8.77; Mature: 8.77

Prosite motif: PS00409 PROKAR_NTER_METHYL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.2 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
3.2 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKQQGYTLIETVVAMSLIIILSATGLYGWQRWQQQQRLWQTACQVRDYLLQLRGDAHWH
CCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
NRDHILRVVSEGGSWCFVSSVATQTSCTPSSPFVFTPDWRDVVLADITPSLAFFGLRNTA
CHHHHEEHCCCCCCEEEEECHHCCCCCCCCCCEEECCCCHHEEEECCCCHHHHHCCCCCC
WAGHIVLKNAAGEWRLVVSSWGRIRLCERNEAATCQ
CCCEEEEECCCCCEEEEEECCCEEEEECCCCCCCCC
>Mature Secondary Structure
MKKQQGYTLIETVVAMSLIIILSATGLYGWQRWQQQQRLWQTACQVRDYLLQLRGDAHWH
CCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
NRDHILRVVSEGGSWCFVSSVATQTSCTPSSPFVFTPDWRDVVLADITPSLAFFGLRNTA
CHHHHEEHCCCCCCEEEEECHHCCCCCCCCCCEEECCCCHHEEEECCCCHHHHHCCCCCC
WAGHIVLKNAAGEWRLVVSSWGRIRLCERNEAATCQ
CCCEEEEECCCCCEEEEEECCCEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3520484; 9278503; 7934814 [H]