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The map label for this gene is ygdI [H]

Identifier: 16766287

GI number: 16766287

Start: 3135536

End: 3135763

Strand: Reverse

Name: ygdI [H]

Synonym: STM2983

Alternate gene names: 16766287

Gene position: 3135763-3135536 (Counterclockwise)

Preceding gene: 16766291

Following gene: 16766286

Centisome position: 64.56

GC content: 45.61

Gene sequence:

>228_bases
ATGAAAAAGACTGCCGCAATTATCTCTGCATGTATGCTGACTTTTGCCCTGAGCGCCTGTTCCGGTCCTAATTACGTTAT
GCACACCAATGATGGACGTAGCATTGTGACCGACGGTAAACCCCAGACCGATAACGATACCGGTATGATTTCGTATAAAG
ACGCTAATGGCAACAAACAGCAGATCAATCGTACTGACGTGAAAGAGATGGTGGCTCTGGAAAACTAA

Upstream 100 bases:

>100_bases
GAATTATGTAAAGGAGGTTATGCTGAATAATGTTAGGCGAATGTTTAAGCCTGTTACGGAGTCCGCTTTAAATAGCACAA
ACAGCTTTAAGGAGAAGAAG

Downstream 100 bases:

>100_bases
CCGTTTGTTATACAAAAAAAAGCACCGCAATATGGCGGTGCTACATTAATCACTATGGACAGACAGGGTAAATGTACAGG
AAGTGAAAAAGGGTAGTCTC

Product: lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 75; Mature: 75

Protein sequence:

>75_residues
MKKTAAIISACMLTFALSACSGPNYVMHTNDGRSIVTDGKPQTDNDTGMISYKDANGNKQQINRTDVKEMVALEN

Sequences:

>Translated_75_residues
MKKTAAIISACMLTFALSACSGPNYVMHTNDGRSIVTDGKPQTDNDTGMISYKDANGNKQQINRTDVKEMVALEN
>Mature_75_residues
MKKTAAIISACMLTFALSACSGPNYVMHTNDGRSIVTDGKPQTDNDTGMISYKDANGNKQQINRTDVKEMVALEN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ygdR [H]

Homologues:

Organism=Escherichia coli, GI87082162, Length=74, Percent_Identity=93.2432432432432, Blast_Score=146, Evalue=2e-37,
Organism=Escherichia coli, GI1789198, Length=71, Percent_Identity=59.1549295774648, Blast_Score=89, Evalue=6e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010305 [H]

Pfam domain/function: PF06004 DUF903 [H]

EC number: NA

Molecular weight: Translated: 8126; Mature: 8126

Theoretical pI: Translated: 7.26; Mature: 7.26

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
6.7 %Met     (Translated Protein)
9.3 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
6.7 %Met     (Mature Protein)
9.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKTAAIISACMLTFALSACSGPNYVMHTNDGRSIVTDGKPQTDNDTGMISYKDANGNKQ
CCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEECCCCCCCCCCCEEEEECCCCCHH
QINRTDVKEMVALEN
HCCHHHHHHHHHCCC
>Mature Secondary Structure
MKKTAAIISACMLTFALSACSGPNYVMHTNDGRSIVTDGKPQTDNDTGMISYKDANGNKQ
CCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEECCCCCCCCCCCEEEEECCCCCHH
QINRTDVKEMVALEN
HCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]