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The map label for this gene is ygcL [H]

Identifier: 16766249

GI number: 16766249

Start: 3082472

End: 3084028

Strand: Reverse

Name: ygcL [H]

Synonym: STM2943

Alternate gene names: 16766249

Gene position: 3084028-3082472 (Counterclockwise)

Preceding gene: 16766250

Following gene: 16766248

Centisome position: 63.49

GC content: 54.4

Gene sequence:

>1557_bases
ATGGACAATTTTTCACTTTTAACAACGCCCTGGCTCCCCGTCCGTTTCAAAGACGGTTCCACGGGCAAGCTGGCCCCCGT
CGATCTGGCGGATGAAAACGTGGTGGACATCGCCGCAACGCGAGCAGATTTACAGGGAGCGGCTTGGCAGTTTCTGTTGG
GATTGCTGCAATGCAGTATCGCGCCGAAAAGATACAAAAATTGGGAGGATATCTGGTTTGATGGATTGCATGCCGATGTG
CTCCATAAGGCATTAGCACCGTTAGAACACGCTTTTCAGTTTGGCGCGGAAACGCCGTCTTTTATGCAGGATTTTGAACC
GTTAAGCGGCGAAAAAGTCTCTATTGCCTCATTGTTGCCGGAAATACCTGGCGCGCAAACCACGAAGTTCAATAAAGATC
ATTTTGTCAAACGCGGCGTAACGGAACGTTTTTGTCCGCACTGCGCGGCGCTGGCGCTGTTCTCGTTGCAGCTTAACGCG
CCTGCGGGCGGCAAAGGCTATCGTACCGGGCTGCGCGGCGGCGGGCCACTGACCACGCTGGTTGAATTGCAGGAATATCA
GGGCGAGCGGCAAACGCCGCTCTGGCGCAAGCTGTGGCTCAACGTGATGCCGCAGGATACTGCGGATCTGCCTTTACCAG
ACCAGTGTGATGCGACCGTTTTCCCGTGGCTTGCCGCGACGCGGACCAGCGAGCAGGCGAATGCCGTTACCACGCCGGAG
CAGGTCAATAAACTCCAGGCGTACTGGGGGATGCCGCGTCGTATCCGCCTGGATTTTGCCACCTTACAGTCAGGTTGCTG
CGATATTTGCGGCGCTGAAAGCGATGAGCTTCTTGGCTTTATGACCGTCAAGAACTACGGCGTTAACTACGATGGCTGGC
GGCACCCGCTGACGCCTTATCGCGCCCCGGTAAAAGATCAAAACGCCTTCTTTTCCGTTAAACCGCAGCCCGGCGGCCTT
ATCTGGCGCGACTGGCTGGGATTAAGTCAGAACAACCAGACGGAAGCGAATTACGAATCTCCCGCGCAGGTAGTCAAGGT
GTTTAACGCCCGCTCGCTGACTGACGTTAAAGCGGGGATCTGGGGCTTTGGCGCGGATTTCGACAATATGAAAATCCGCT
GCTGGTATGAGCATCACTTCCCGTTGCTGATGACGGAAGGTCTGATCCCTGATTTACGTAAGGCCGTGCAAACTGCGGCC
CGCCTGTTGAGCCTGCTTCGCAGCGCGCTCAAAGAGGCCTGGTTTGCCGATGCGAAGGGTGCTCGCGGTGATTTCAGTTT
TATCGACATTGATTTCTGGAACCTGACGCAGGGACGTTTTCTCAACCTGATTCACGATCTGGAAAACGGCCACAAGCCGG
ACGAAAGGCTGAATAAATGGCAAAGAGAACTTTGGCTGTTTACCCGTCATTACTTCGATGATCACGTCTTTACCAACCCC
TACGAGAGCAGCGATCTGGAACGCATCATGACCGCGCGCAAGAAATATTTTACGACATCGGCGGAAAAACAAAGTGCAAA
AGCCGCCAAAGCAAAGAAACAGGAGGCTGCTGAATGA

Upstream 100 bases:

>100_bases
AGGATTTTGCCACGGTGATTGTGGTGACGGACTTTGCCGCTTGTGGTTATTCGGCGAATGAGGGATTGATTGGCATGATG
GGGGAATAACGAATACAGAT

Downstream 100 bases:

>100_bases
GTGTTGTGACGAAAGATGATAAAGCCACTTTGCGTCAGTGGCATGAGGAACTACAAGAAAAACGTGGATTACGTGCCAGC
TTACGACGTAGTAAAACGGT

Product: cytoplasmic protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 518; Mature: 518

Protein sequence:

>518_residues
MDNFSLLTTPWLPVRFKDGSTGKLAPVDLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADV
LHKALAPLEHAFQFGAETPSFMQDFEPLSGEKVSIASLLPEIPGAQTTKFNKDHFVKRGVTERFCPHCAALALFSLQLNA
PAGGKGYRTGLRGGGPLTTLVELQEYQGERQTPLWRKLWLNVMPQDTADLPLPDQCDATVFPWLAATRTSEQANAVTTPE
QVNKLQAYWGMPRRIRLDFATLQSGCCDICGAESDELLGFMTVKNYGVNYDGWRHPLTPYRAPVKDQNAFFSVKPQPGGL
IWRDWLGLSQNNQTEANYESPAQVVKVFNARSLTDVKAGIWGFGADFDNMKIRCWYEHHFPLLMTEGLIPDLRKAVQTAA
RLLSLLRSALKEAWFADAKGARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRHYFDDHVFTNP
YESSDLERIMTARKKYFTTSAEKQSAKAAKAKKQEAAE

Sequences:

>Translated_518_residues
MDNFSLLTTPWLPVRFKDGSTGKLAPVDLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADV
LHKALAPLEHAFQFGAETPSFMQDFEPLSGEKVSIASLLPEIPGAQTTKFNKDHFVKRGVTERFCPHCAALALFSLQLNA
PAGGKGYRTGLRGGGPLTTLVELQEYQGERQTPLWRKLWLNVMPQDTADLPLPDQCDATVFPWLAATRTSEQANAVTTPE
QVNKLQAYWGMPRRIRLDFATLQSGCCDICGAESDELLGFMTVKNYGVNYDGWRHPLTPYRAPVKDQNAFFSVKPQPGGL
IWRDWLGLSQNNQTEANYESPAQVVKVFNARSLTDVKAGIWGFGADFDNMKIRCWYEHHFPLLMTEGLIPDLRKAVQTAA
RLLSLLRSALKEAWFADAKGARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRHYFDDHVFTNP
YESSDLERIMTARKKYFTTSAEKQSAKAAKAKKQEAAE
>Mature_518_residues
MDNFSLLTTPWLPVRFKDGSTGKLAPVDLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADV
LHKALAPLEHAFQFGAETPSFMQDFEPLSGEKVSIASLLPEIPGAQTTKFNKDHFVKRGVTERFCPHCAALALFSLQLNA
PAGGKGYRTGLRGGGPLTTLVELQEYQGERQTPLWRKLWLNVMPQDTADLPLPDQCDATVFPWLAATRTSEQANAVTTPE
QVNKLQAYWGMPRRIRLDFATLQSGCCDICGAESDELLGFMTVKNYGVNYDGWRHPLTPYRAPVKDQNAFFSVKPQPGGL
IWRDWLGLSQNNQTEANYESPAQVVKVFNARSLTDVKAGIWGFGADFDNMKIRCWYEHHFPLLMTEGLIPDLRKAVQTAA
RLLSLLRSALKEAWFADAKGARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRHYFDDHVFTNP
YESSDLERIMTARKKYFTTSAEKQSAKAAKAKKQEAAE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789118, Length=314, Percent_Identity=26.7515923566879, Blast_Score=80, Evalue=5e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013381 [H]

Pfam domain/function: PF09481 CRISPR_Cse1 [H]

EC number: NA

Molecular weight: Translated: 58595; Mature: 58595

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNFSLLTTPWLPVRFKDGSTGKLAPVDLADENVVDIAATRADLQGAAWQFLLGLLQCSI
CCCCCEEECCCEEEEECCCCCCCEEECCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCC
APKRYKNWEDIWFDGLHADVLHKALAPLEHAFQFGAETPSFMQDFEPLSGEKVSIASLLP
CHHHCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCEEEHHHHCC
EIPGAQTTKFNKDHFVKRGVTERFCPHCAALALFSLQLNAPAGGKGYRTGLRGGGPLTTL
CCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCHHHH
VELQEYQGERQTPLWRKLWLNVMPQDTADLPLPDQCDATVFPWLAATRTSEQANAVTTPE
HHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHH
QVNKLQAYWGMPRRIRLDFATLQSGCCDICGAESDELLGFMTVKNYGVNYDGWRHPLTPY
HHHHHHHHHCCCCEEEEEHHHHHCCCHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCCC
RAPVKDQNAFFSVKPQPGGLIWRDWLGLSQNNQTEANYESPAQVVKVFNARSLTDVKAGI
CCCCCCCCCEEEECCCCCCEEEHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHCC
WGFGADFDNMKIRCWYEHHFPLLMTEGLIPDLRKAVQTAARLLSLLRSALKEAWFADAKG
EECCCCCCCCEEEEEEECCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
ARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRHYFDDHVFTNP
CCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
YESSDLERIMTARKKYFTTSAEKQSAKAAKAKKQEAAE
CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDNFSLLTTPWLPVRFKDGSTGKLAPVDLADENVVDIAATRADLQGAAWQFLLGLLQCSI
CCCCCEEECCCEEEEECCCCCCCEEECCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCC
APKRYKNWEDIWFDGLHADVLHKALAPLEHAFQFGAETPSFMQDFEPLSGEKVSIASLLP
CHHHCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCEEEHHHHCC
EIPGAQTTKFNKDHFVKRGVTERFCPHCAALALFSLQLNAPAGGKGYRTGLRGGGPLTTL
CCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCHHHH
VELQEYQGERQTPLWRKLWLNVMPQDTADLPLPDQCDATVFPWLAATRTSEQANAVTTPE
HHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHH
QVNKLQAYWGMPRRIRLDFATLQSGCCDICGAESDELLGFMTVKNYGVNYDGWRHPLTPY
HHHHHHHHHCCCCEEEEEHHHHHCCCHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCCC
RAPVKDQNAFFSVKPQPGGLIWRDWLGLSQNNQTEANYESPAQVVKVFNARSLTDVKAGI
CCCCCCCCCEEEECCCCCCEEEHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHCC
WGFGADFDNMKIRCWYEHHFPLLMTEGLIPDLRKAVQTAARLLSLLRSALKEAWFADAKG
EECCCCCCCCEEEEEEECCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
ARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRHYFDDHVFTNP
CCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
YESSDLERIMTARKKYFTTSAEKQSAKAAKAKKQEAAE
CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]