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The map label for this gene is yqaA [H]

Identifier: 16766130

GI number: 16766130

Start: 2968568

End: 2968993

Strand: Reverse

Name: yqaA [H]

Synonym: STM2819

Alternate gene names: 16766130

Gene position: 2968993-2968568 (Counterclockwise)

Preceding gene: 16766131

Following gene: 16766129

Centisome position: 61.12

GC content: 53.76

Gene sequence:

>426_bases
GTGAGTGACGGACTGTCGCTCCTGTCTCTGTTTGCCAGTAGTTTTCTCAGCGCGACGCTGTTACCCGGTAATTCTGAGGT
GGTTTTGGTTGCTATGCTGGTCTCCGGCGTCAGCCATCCCTGGGTCTTAGTCTTAACAGCAACAATGGGTAATAGCCTTG
GAGGGGTAACTAACGTTATTCTTGGGCGTTTCTTTCCGCTGCGCAAAACGTCGCGTTGGCAGGAAAAAGCGACTGGCTGG
CTAAAGCGTTATGGCGCAGCCACACTATTATTAAGCTGGATGCCGGTCATCGGTGATTTGTTGTGCCTGTTAGCGGGATG
GATGCGCATCCCGTGGGGGCGGACGATCTTTTTTTTGTGTCTTGGTAAGGCGCTGCGCTATGTTGCGCTCGCAGCGGCGA
CGGTTCAGGGCATGATGTGGTGGTAA

Upstream 100 bases:

>100_bases
TGGGCGTCATGCCGACGCAGTGCGTGGTATTTGAAGATGCCGATTTTGGTTTACAGGCGGCGCGGGCGGCGGGAATGGAT
GCCGTGGATGTCCGACTATT

Downstream 100 bases:

>100_bases
TAATTGTAGGTTTGGCATGTATGGCCGCCATTACAGTTATGCTTATTAAAACGATTTGGACAGGCGGGAGGTCAATTTGA
TCCCGGACGTATCACAGGCT

Product: inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 141; Mature: 140

Protein sequence:

>141_residues
MSDGLSLLSLFASSFLSATLLPGNSEVVLVAMLVSGVSHPWVLVLTATMGNSLGGVTNVILGRFFPLRKTSRWQEKATGW
LKRYGAATLLLSWMPVIGDLLCLLAGWMRIPWGRTIFFLCLGKALRYVALAAATVQGMMWW

Sequences:

>Translated_141_residues
MSDGLSLLSLFASSFLSATLLPGNSEVVLVAMLVSGVSHPWVLVLTATMGNSLGGVTNVILGRFFPLRKTSRWQEKATGW
LKRYGAATLLLSWMPVIGDLLCLLAGWMRIPWGRTIFFLCLGKALRYVALAAATVQGMMWW
>Mature_140_residues
SDGLSLLSLFASSFLSATLLPGNSEVVLVAMLVSGVSHPWVLVLTATMGNSLGGVTNVILGRFFPLRKTSRWQEKATGWL
KRYGAATLLLSWMPVIGDLLCLLAGWMRIPWGRTIFFLCLGKALRYVALAAATVQGMMWW

Specific function: Unknown

COG id: COG1238

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_0489 [H]

Homologues:

Organism=Escherichia coli, GI1789045, Length=141, Percent_Identity=91.4893617021277, Blast_Score=258, Evalue=1e-70,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 15420; Mature: 15288

Theoretical pI: Translated: 10.86; Mature: 10.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDGLSLLSLFASSFLSATLLPGNSEVVLVAMLVSGVSHPWVLVLTATMGNSLGGVTNVI
CCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCEEEEEHHHCCCCCHHHHHH
LGRFFPLRKTSRWQEKATGWLKRYGAATLLLSWMPVIGDLLCLLAGWMRIPWGRTIFFLC
HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
LGKALRYVALAAATVQGMMWW
HHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SDGLSLLSLFASSFLSATLLPGNSEVVLVAMLVSGVSHPWVLVLTATMGNSLGGVTNVI
CCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCEEEEEHHHCCCCCHHHHHH
LGRFFPLRKTSRWQEKATGWLKRYGAATLLLSWMPVIGDLLCLLAGWMRIPWGRTIFFLC
HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
LGKALRYVALAAATVQGMMWW
HHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]