Click here to switch to the map view.

The map label for this gene is yfjF

Identifier: 16766001

GI number: 16766001

Start: 2825578

End: 2825868

Strand: Reverse

Name: yfjF

Synonym: STM2686

Alternate gene names: 16766001

Gene position: 2825868-2825578 (Counterclockwise)

Preceding gene: 16766002

Following gene: 16765996

Centisome position: 58.18

GC content: 53.61

Gene sequence:

>291_bases
GTGCCGGATAAACTTGTGGTTGAAGTGGCTTATGCGCTGCCGGAAAAGCAGTATTTGCAGCGCGTAACGCTGGAGGAGGG
CGCGACGGTCGAAGAGGCGATTCGCGCTTCCGGCTTGCTGGAATTGCGCACGGATATCGATCTGGCGAAAAATAAAGTAG
GTATCTACAGTCGTCCGGTAAAACTCACCGATACGGTGCAGGATGGCGATCGGGTTGAAATTTACCGTCCCTTAATCGCC
GATCCAAAAGCATTACGCCGCCAGCGCGCCGAAAAATCGGCTGGTAGATAA

Upstream 100 bases:

>100_bases
TTTACCAATAAACTCATTGAGCTGGCGTTTGGTCGTATATTCAAAGAGTTAGCGTCCAACATGGTGCAGGCGTTTACGGT
TCGCGCCAAAGAGGTTTACC

Downstream 100 bases:

>100_bases
TTAGCCTCTTTTGCCGGATAACGGTGTGAAAGCCGTACCACACCTGAAGCACAGGCGTGCCTGTAAGCCAGATAAACGTA
GCGCCATCAGGCAAATTCGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 96; Mature: 95

Protein sequence:

>96_residues
MPDKLVVEVAYALPEKQYLQRVTLEEGATVEEAIRASGLLELRTDIDLAKNKVGIYSRPVKLTDTVQDGDRVEIYRPLIA
DPKALRRQRAEKSAGR

Sequences:

>Translated_96_residues
MPDKLVVEVAYALPEKQYLQRVTLEEGATVEEAIRASGLLELRTDIDLAKNKVGIYSRPVKLTDTVQDGDRVEIYRPLIA
DPKALRRQRAEKSAGR
>Mature_95_residues
PDKLVVEVAYALPEKQYLQRVTLEEGATVEEAIRASGLLELRTDIDLAKNKVGIYSRPVKLTDTVQDGDRVEIYRPLIAD
PKALRRQRAEKSAGR

Specific function: Unknown

COG id: COG2914

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0125 (rnfH) family

Homologues:

Organism=Escherichia coli, GI87082139, Length=96, Percent_Identity=87.5, Blast_Score=171, Evalue=1e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNFH_SALA4 (B5F298)

Other databases:

- EMBL:   CP001138
- RefSeq:   YP_002147621.1
- ProteinModelPortal:   B5F298
- SMR:   B5F298
- GeneID:   6795413
- GenomeReviews:   CP001138_GR
- KEGG:   sea:SeAg_B2831
- HOGENOM:   HBG700644
- OMA:   PKDVRRK
- ProtClustDB:   PRK01777
- HAMAP:   MF_00460
- InterPro:   IPR005346

Pfam domain/function: PF03658 UPF0125

EC number: NA

Molecular weight: Translated: 10807; Mature: 10675

Theoretical pI: Translated: 8.90; Mature: 8.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDKLVVEVAYALPEKQYLQRVTLEEGATVEEAIRASGLLELRTDIDLAKNKVGIYSRPV
CCCHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHCHHHHCCCCCCCCCCE
KLTDTVQDGDRVEIYRPLIADPKALRRQRAEKSAGR
EEECCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCC
>Mature Secondary Structure 
PDKLVVEVAYALPEKQYLQRVTLEEGATVEEAIRASGLLELRTDIDLAKNKVGIYSRPV
CCHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHCHHHHCCCCCCCCCCE
KLTDTVQDGDRVEIYRPLIADPKALRRQRAEKSAGR
EEECCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA