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The map label for this gene is ybiF

Identifier: 16764194

GI number: 16764194

Start: 898293

End: 899180

Strand: Reverse

Name: ybiF

Synonym: STM0832

Alternate gene names: 16764194

Gene position: 899180-898293 (Counterclockwise)

Preceding gene: 16764196

Following gene: 16764193

Centisome position: 18.51

GC content: 56.19

Gene sequence:

>888_bases
ATGCCGGGGTCAACACGTAAACTACCAGTCTGGTTGCCCATTTTGGTTTTGCTCATTGCCATGTCCTCTATTCAGAGTGG
CGCTTCACTGGCGAAATCGTTATTTCCTCTTGTCGGCGCGCCGGGCGTAACGGCGCTTCGTCTGGCGTTGGGAACGCTTA
TCCTTATCGCCTTTTTCAAACCCTGGCGTTTGCGTTTTGCCAAAGAGCAGCGGCTGCCTTTATTGTTTTATGGTCTGTCG
CTGGGCGGGATGAACTATCTATTCTATCTGTCGATTCAGACGGTGCCGTTGGGTATTGCGGTCGCGCTGGAATTTACCGG
TCCTCTGGCGGTCGCGCTGTTTTCATCCCGGCGGCCGGTAGATTTTATTTGGGTCGTACTGGCTGTGCTTGGGCTCTGGT
TCCTGCTGCCATTAGGACAAGATATGTCTCACGTCGATCTTACCGGGGCCGCGTTGGCGCTCGGCGCTGGCGCCTGTTGG
GCTGTCTATATTCTTACCGGCCAGCGAGCAGGCGCGGAACATGGTCCGGCCACGGTGGCGGTAGGCTCGCTGATTGCCGC
CATCATTTTCGTGCCGATTGGCGCAGTTCAGGCTGGCGACGCGCTATGGCACTGGTCGATTCTTCCCTTAGGGTTAGCGG
TCGCTGTGCTTTCTACGGCGCTGCCTTATTCACTGGAAATGATTGCGCTGACGCGCCTGCCAACCCGCACCTTCGGTACG
CTGATGAGCATGGAACCCGCGCTGGCCGCCGTTTCCGGGATGATTTTTCTGGGCGAAACGCTTACGGGCATACAAATCCT
GGCCCTGTGCGCCATCATTGCCGCCTCAATGGGTTCTACCCTAACGATTCGACGCGAACCGCAAATTAAACAAGTTGACG
TAAAATAG

Upstream 100 bases:

>100_bases
AATCCTGGAAATTTTTTTTCAACGAACCCTCAACCGCCGCGGGGAATTTCCATTACACTGCCACCTTTACTCGTACTGAC
ATTTTTTGACAGGAGAAAGG

Downstream 100 bases:

>100_bases
TTTCTTATTCTGCATGATGTGCATAATCATGCAGAATATCACCTCGTTATTCACCTTTTATTATTGCGCTATTACTTCGT
CATTTTTTGTCATATTTTTT

Product: threonine and homoserine efflux system

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 295; Mature: 294

Protein sequence:

>295_residues
MPGSTRKLPVWLPILVLLIAMSSIQSGASLAKSLFPLVGAPGVTALRLALGTLILIAFFKPWRLRFAKEQRLPLLFYGLS
LGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSSRRPVDFIWVVLAVLGLWFLLPLGQDMSHVDLTGAALALGAGACW
AVYILTGQRAGAEHGPATVAVGSLIAAIIFVPIGAVQAGDALWHWSILPLGLAVAVLSTALPYSLEMIALTRLPTRTFGT
LMSMEPALAAVSGMIFLGETLTGIQILALCAIIAASMGSTLTIRREPQIKQVDVK

Sequences:

>Translated_295_residues
MPGSTRKLPVWLPILVLLIAMSSIQSGASLAKSLFPLVGAPGVTALRLALGTLILIAFFKPWRLRFAKEQRLPLLFYGLS
LGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSSRRPVDFIWVVLAVLGLWFLLPLGQDMSHVDLTGAALALGAGACW
AVYILTGQRAGAEHGPATVAVGSLIAAIIFVPIGAVQAGDALWHWSILPLGLAVAVLSTALPYSLEMIALTRLPTRTFGT
LMSMEPALAAVSGMIFLGETLTGIQILALCAIIAASMGSTLTIRREPQIKQVDVK
>Mature_294_residues
PGSTRKLPVWLPILVLLIAMSSIQSGASLAKSLFPLVGAPGVTALRLALGTLILIAFFKPWRLRFAKEQRLPLLFYGLSL
GGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSSRRPVDFIWVVLAVLGLWFLLPLGQDMSHVDLTGAALALGAGACWA
VYILTGQRAGAEHGPATVAVGSLIAAIIFVPIGAVQAGDALWHWSILPLGLAVAVLSTALPYSLEMIALTRLPTRTFGTL
MSMEPALAAVSGMIFLGETLTGIQILALCAIIAASMGSTLTIRREPQIKQVDVK

Specific function: Unknown

COG id: COG5006

COG function: function code R; Predicted permease, DMT superfamily

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the eamA transporter family

Homologues:

Organism=Escherichia coli, GI1787033, Length=295, Percent_Identity=89.4915254237288, Blast_Score=529, Evalue=1e-152,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RHTA_SALTY (P74867)

Other databases:

- EMBL:   AE006468
- EMBL:   U62709
- RefSeq:   NP_459809.1
- GeneID:   1252351
- GenomeReviews:   AE006468_GR
- KEGG:   stm:STM0832
- HOGENOM:   HBG352302
- OMA:   SMASLCI
- ProtClustDB:   PRK10532
- BioCyc:   STYP99287:STM0832-MONOMER
- GO:   GO:0006810
- InterPro:   IPR000620

Pfam domain/function: PF00892 DUF6

EC number: NA

Molecular weight: Translated: 31228; Mature: 31097

Theoretical pI: Translated: 10.01; Mature: 10.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xc855008)-; HASH(0xcaf8b08)-; HASH(0xc73f8d8)-; HASH(0xda4a8e0)-; HASH(0xc41aaac)-; HASH(0xc56a888)-; HASH(0xd84b82c)-; HASH(0xda23b84)-; HASH(0xb731ed0)-; HASH(0xdae0730)-;

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPGSTRKLPVWLPILVLLIAMSSIQSGASLAKSLFPLVGAPGVTALRLALGTLILIAFFK
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
PWRLRFAKEQRLPLLFYGLSLGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSSRRPV
HHHHHHHHHCCCCEEEEECCCCCCEEEEEEEEEEECEEEEEEEEECCCEEEEHHCCCCCH
DFIWVVLAVLGLWFLLPLGQDMSHVDLTGAALALGAGACWAVYILTGQRAGAEHGPATVA
HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCEEEEEEEECCCCCCCCCCHHHH
VGSLIAAIIFVPIGAVQAGDALWHWSILPLGLAVAVLSTALPYSLEMIALTRLPTRTFGT
HHHHHHHHHHHHCCCCCCCCCCEEHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHH
LMSMEPALAAVSGMIFLGETLTGIQILALCAIIAASMGSTLTIRREPQIKQVDVK
HHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCH
>Mature Secondary Structure 
PGSTRKLPVWLPILVLLIAMSSIQSGASLAKSLFPLVGAPGVTALRLALGTLILIAFFK
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
PWRLRFAKEQRLPLLFYGLSLGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSSRRPV
HHHHHHHHHCCCCEEEEECCCCCCEEEEEEEEEEECEEEEEEEEECCCEEEEHHCCCCCH
DFIWVVLAVLGLWFLLPLGQDMSHVDLTGAALALGAGACWAVYILTGQRAGAEHGPATVA
HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCEEEEEEEECCCCCCCCCCHHHH
VGSLIAAIIFVPIGAVQAGDALWHWSILPLGLAVAVLSTALPYSLEMIALTRLPTRTFGT
HHHHHHHHHHHHCCCCCCCCCCEEHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHH
LMSMEPALAAVSGMIFLGETLTGIQILALCAIIAASMGSTLTIRREPQIKQVDVK
HHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11677609; 8930920