Click here to switch to the map view.

The map label for this gene is ybhR [H]

Identifier: 16764178

GI number: 16764178

Start: 879613

End: 880719

Strand: Reverse

Name: ybhR [H]

Synonym: STM0815

Alternate gene names: 16764178

Gene position: 880719-879613 (Counterclockwise)

Preceding gene: 16764179

Following gene: 16764176

Centisome position: 18.13

GC content: 52.85

Gene sequence:

>1107_bases
ATGTTTCATCGCTTATGGACGTTAATTCGCAAAGAACTGCAATCGCTTTTACGCGAACCGCAAACGCGCGCGATCCTGAT
TCTGCCGGTGCTGATTCAGGTCATCCTGTTTCCGTTCGCCGCGACGCTTGAAGTCACTAACGCGACTATCGCCATCTATA
ACGAAGATAACGGCAAACATTCGGTAGAACTTACCCAGCGCTTTGCCCGCGCGAAAGCGTTTACCCATGTGCTATTGCTG
AACAGTCCGCAGGAGATCCAGCCGACTATCGATACGCAAAAAGCGCTGCTGCTGGTACGCTTCCCGGCGGATTTCTCGCG
GAATCTGGATACCTTCCAGCCTGCGCCGATGCAACTCATTCTTGATGGACGTAACTCCAACAGCGCGCAAATCGCCGCCA
ATTATCTGCAACAGATCGTCAAGGAGTATCAGCAGACATTGATGGACGGCAAGCCAAAGCCCAACAATAGCGAACTGGTG
GTACGCAACTGGTATAACCCGAATCTGGACTACAAGTGGTTTGTGGTGCCCTCGCTGATCGCCATGATCACCACTATCGG
CGTGATGATCGTCACTTCGCTGTCCGTCGCCCGCGAACGTGAACAAGGCACTCTGGATCAGCTGCTGGTCTCTCCGCTCA
CCACCTGGCAGATTTTCGTTGGTAAAGCGGTGCCGGCGCTGATTGTCGCGACCTTCCAGGCCACGATCGTGCTGGCTATC
GGCATTTGGGCATACCAAATTCCCTTCGCCGGTTCGTTAGCGCTGTTTTATTTCACGATGGTGATTTACGGGCTGTCGCT
GGTAGGCTTTGGCTTGCTGATATCATCGCTTTGCGCCACGCAACAGCAGGCGTTTATCGGCGTCTTTGTCTTTATGATGC
CGGCGATTTTGCTCTCGGGTTATGTCTCGCCGGTGGAAAATATGCCGGTCTGGCTGCAAAACCTGACGTGGATAAATCCT
ATCCGCCACTTTACTGATATTACTAAGCAAATTTATCTTAAGGACGCGAGTCTGGGGATTGTCTGGGGAAGTTTGTGGCC
GCTACTGGTGATAGCGGCCACCACGGGTTCAGCGGCGTATGCGATGTTTAGACGCAAAGTGATGTAG

Upstream 100 bases:

>100_bases
ATTGTCGTCGTAGGCCGGATAAGGCGTTCACGCCGCCATCCGGCATTATGCCTGATGCGCTTTGCTTATCAGGCCTACAA
ACTGGACTGAGAGGACGGAC

Downstream 100 bases:

>100_bases
CTTTTTATCTTTCGCCAGTAGCGAGACCACGGCGGGCCCGGCCAGGATAGCCAGCCCCGCCAGCGCCAGTAAAACATTGT
TTTGCAAGACGCGGGATAGC

Product: transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 368; Mature: 368

Protein sequence:

>368_residues
MFHRLWTLIRKELQSLLREPQTRAILILPVLIQVILFPFAATLEVTNATIAIYNEDNGKHSVELTQRFARAKAFTHVLLL
NSPQEIQPTIDTQKALLLVRFPADFSRNLDTFQPAPMQLILDGRNSNSAQIAANYLQQIVKEYQQTLMDGKPKPNNSELV
VRNWYNPNLDYKWFVVPSLIAMITTIGVMIVTSLSVAREREQGTLDQLLVSPLTTWQIFVGKAVPALIVATFQATIVLAI
GIWAYQIPFAGSLALFYFTMVIYGLSLVGFGLLISSLCATQQQAFIGVFVFMMPAILLSGYVSPVENMPVWLQNLTWINP
IRHFTDITKQIYLKDASLGIVWGSLWPLLVIAATTGSAAYAMFRRKVM

Sequences:

>Translated_368_residues
MFHRLWTLIRKELQSLLREPQTRAILILPVLIQVILFPFAATLEVTNATIAIYNEDNGKHSVELTQRFARAKAFTHVLLL
NSPQEIQPTIDTQKALLLVRFPADFSRNLDTFQPAPMQLILDGRNSNSAQIAANYLQQIVKEYQQTLMDGKPKPNNSELV
VRNWYNPNLDYKWFVVPSLIAMITTIGVMIVTSLSVAREREQGTLDQLLVSPLTTWQIFVGKAVPALIVATFQATIVLAI
GIWAYQIPFAGSLALFYFTMVIYGLSLVGFGLLISSLCATQQQAFIGVFVFMMPAILLSGYVSPVENMPVWLQNLTWINP
IRHFTDITKQIYLKDASLGIVWGSLWPLLVIAATTGSAAYAMFRRKVM
>Mature_368_residues
MFHRLWTLIRKELQSLLREPQTRAILILPVLIQVILFPFAATLEVTNATIAIYNEDNGKHSVELTQRFARAKAFTHVLLL
NSPQEIQPTIDTQKALLLVRFPADFSRNLDTFQPAPMQLILDGRNSNSAQIAANYLQQIVKEYQQTLMDGKPKPNNSELV
VRNWYNPNLDYKWFVVPSLIAMITTIGVMIVTSLSVAREREQGTLDQLLVSPLTTWQIFVGKAVPALIVATFQATIVLAI
GIWAYQIPFAGSLALFYFTMVIYGLSLVGFGLLISSLCATQQQAFIGVFVFMMPAILLSGYVSPVENMPVWLQNLTWINP
IRHFTDITKQIYLKDASLGIVWGSLWPLLVIAATTGSAAYAMFRRKVM

Specific function: Unknown

COG id: COG0842

COG function: function code V; ABC-type multidrug transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

Organism=Escherichia coli, GI1787010, Length=368, Percent_Identity=95.3804347826087, Blast_Score=715, Evalue=0.0,
Organism=Escherichia coli, GI1787011, Length=335, Percent_Identity=25.3731343283582, Blast_Score=140, Evalue=2e-34,
Organism=Escherichia coli, GI48994943, Length=354, Percent_Identity=22.316384180791, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI226510979, Length=374, Percent_Identity=23.7967914438503, Blast_Score=104, Evalue=9e-24,
Organism=Drosophila melanogaster, GI85725260, Length=367, Percent_Identity=23.1607629427793, Blast_Score=72, Evalue=6e-13,
Organism=Drosophila melanogaster, GI85725262, Length=367, Percent_Identity=23.1607629427793, Blast_Score=71, Evalue=9e-13,
Organism=Drosophila melanogaster, GI24650855, Length=226, Percent_Identity=24.3362831858407, Blast_Score=66, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24650853, Length=226, Percent_Identity=24.3362831858407, Blast_Score=66, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013526
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 41379; Mature: 41379

Theoretical pI: Translated: 9.71; Mature: 9.71

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFHRLWTLIRKELQSLLREPQTRAILILPVLIQVILFPFAATLEVTNATIAIYNEDNGKH
CHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHEEEECEEEEEEECCCCCH
SVELTQRFARAKAFTHVLLLNSPQEIQPTIDTQKALLLVRFPADFSRNLDTFQPAPMQLI
HHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCEEEEEEECCCCHHCCCCCCCCCCEEEE
LDGRNSNSAQIAANYLQQIVKEYQQTLMDGKPKPNNSELVVRNWYNPNLDYKWFVVPSLI
EECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCEEEEHHHHHH
AMITTIGVMIVTSLSVAREREQGTLDQLLVSPLTTWQIFVGKAVPALIVATFQATIVLAI
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GIWAYQIPFAGSLALFYFTMVIYGLSLVGFGLLISSLCATQQQAFIGVFVFMMPAILLSG
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YVSPVENMPVWLQNLTWINPIRHFTDITKQIYLKDASLGIVWGSLWPLLVIAATTGSAAY
CCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHEECCCCCEEHHHHHHHHHHHCCCCHHHH
AMFRRKVM
HHHHHHCC
>Mature Secondary Structure
MFHRLWTLIRKELQSLLREPQTRAILILPVLIQVILFPFAATLEVTNATIAIYNEDNGKH
CHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHEEEECEEEEEEECCCCCH
SVELTQRFARAKAFTHVLLLNSPQEIQPTIDTQKALLLVRFPADFSRNLDTFQPAPMQLI
HHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCEEEEEEECCCCHHCCCCCCCCCCEEEE
LDGRNSNSAQIAANYLQQIVKEYQQTLMDGKPKPNNSELVVRNWYNPNLDYKWFVVPSLI
EECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCEEEEHHHHHH
AMITTIGVMIVTSLSVAREREQGTLDQLLVSPLTTWQIFVGKAVPALIVATFQATIVLAI
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GIWAYQIPFAGSLALFYFTMVIYGLSLVGFGLLISSLCATQQQAFIGVFVFMMPAILLSG
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YVSPVENMPVWLQNLTWINPIRHFTDITKQIYLKDASLGIVWGSLWPLLVIAATTGSAAY
CCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHEECCCCCEEHHHHHHHHHHHCCCCHHHH
AMFRRKVM
HHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]