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The map label for this gene is rlpB [H]

Identifier: 16764024

GI number: 16764024

Start: 708520

End: 709110

Strand: Reverse

Name: rlpB [H]

Synonym: STM0647

Alternate gene names: 16764024

Gene position: 709110-708520 (Counterclockwise)

Preceding gene: 16764025

Following gene: 16764023

Centisome position: 14.6

GC content: 55.16

Gene sequence:

>591_bases
GTGCGATATCTGGTAACACTGTTGTTATCTCTGGCGGTGCTGGTCACCGCCGGATGCGGCTGGCATCTGCGTAGCACTAC
GCAGGTTCCGGCTTCAATGAAAACGATGATCCTCGATTCCGGCGATCCGAACGGTCCGCTAAGTCGTGCGGTACGTAATC
AGTTACGGCTGAATAACGTAAACCTGCTTGATAAAGACACAACGCGCAAAGACGTTCCGTCTCTGCGGCTTGGAACGGTG
ACTATTTTGCAGGATACGGCGTCAGTGTTCCAGGACGGCCAGACGGCGGAATATCAGATGGTGATGACCGTCAATGCCTC
GGTATTGATTCCGGGCCATGACATCTATCCTATCAGCACGAAAGTGTACCGTTCGTTCTTCGATAACCCGCAGATGGCGT
TGGCGAAGGATAACGAGCAGGCCATGATCGTTCAGGAGATGTACGACAAAGCCGCTGAACAGCTGATTCGTAAGCTGACC
AGCGTCCGCGCGGCGGATATTCAGGCGACGAAAGAGGAGGCTACCGCCGACAATGAGACGGCGGCGCCCGCCTCTACGCC
AGCACGCGTCTCCACTACGCTGAGTAACTAA

Upstream 100 bases:

>100_bases
ATCTGGTGGCAAAATATCTTGATGGCGTTACCGTGCGTAAAGTGATTTACGTTCCGGGTAAACTCCTCAATCTGGTTGTT
GGCTAAGCGCGGGAGGAAGC

Downstream 100 bases:

>100_bases
TGATCAGGTTGTATCCTGAACAACTCCGCGCGCAGCTCAATGAAGGGCTGCGTGCGGCATATCTGCTATTGGGCAACGAT
CCGCTGCTGCTGCAGGAAAG

Product: LPS-assembly lipoprotein RlpB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 196; Mature: 196

Protein sequence:

>196_residues
MRYLVTLLLSLAVLVTAGCGWHLRSTTQVPASMKTMILDSGDPNGPLSRAVRNQLRLNNVNLLDKDTTRKDVPSLRLGTV
TILQDTASVFQDGQTAEYQMVMTVNASVLIPGHDIYPISTKVYRSFFDNPQMALAKDNEQAMIVQEMYDKAAEQLIRKLT
SVRAADIQATKEEATADNETAAPASTPARVSTTLSN

Sequences:

>Translated_196_residues
MRYLVTLLLSLAVLVTAGCGWHLRSTTQVPASMKTMILDSGDPNGPLSRAVRNQLRLNNVNLLDKDTTRKDVPSLRLGTV
TILQDTASVFQDGQTAEYQMVMTVNASVLIPGHDIYPISTKVYRSFFDNPQMALAKDNEQAMIVQEMYDKAAEQLIRKLT
SVRAADIQATKEEATADNETAAPASTPARVSTTLSN
>Mature_196_residues
MRYLVTLLLSLAVLVTAGCGWHLRSTTQVPASMKTMILDSGDPNGPLSRAVRNQLRLNNVNLLDKDTTRKDVPSLRLGTV
TILQDTASVFQDGQTAEYQMVMTVNASVLIPGHDIYPISTKVYRSFFDNPQMALAKDNEQAMIVQEMYDKAAEQLIRKLT
SVRAADIQATKEEATADNETAAPASTPARVSTTLSN

Specific function: Together with lptD, is involved in the assembly of LPS in the outer leaflet of the outer membrane [H]

COG id: COG2980

COG function: function code M; Rare lipoprotein B

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the lptE lipoprotein family [H]

Homologues:

Organism=Escherichia coli, GI1786860, Length=196, Percent_Identity=78.5714285714286, Blast_Score=312, Evalue=8e-87,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007485 [H]

Pfam domain/function: PF04390 RplB [H]

EC number: NA

Molecular weight: Translated: 21458; Mature: 21458

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRYLVTLLLSLAVLVTAGCGWHLRSTTQVPASMKTMILDSGDPNGPLSRAVRNQLRLNNV
CHHHHHHHHHHHHHHHCCCCCEECCCCCCCCHHEEEEEECCCCCCHHHHHHHHHHHCCCC
NLLDKDTTRKDVPSLRLGTVTILQDTASVFQDGQTAEYQMVMTVNASVLIPGHDIYPIST
CCCCCCCCCCCCCCEEECEEEEHHHHHHHHCCCCCCCEEEEEEECCEEEECCCCCCCCHH
KVYRSFFDNPQMALAKDNEQAMIVQEMYDKAAEQLIRKLTSVRAADIQATKEEATADNET
HHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
AAPASTPARVSTTLSN
CCCCCCCCEEEEECCC
>Mature Secondary Structure
MRYLVTLLLSLAVLVTAGCGWHLRSTTQVPASMKTMILDSGDPNGPLSRAVRNQLRLNNV
CHHHHHHHHHHHHHHHCCCCCEECCCCCCCCHHEEEEEECCCCCCHHHHHHHHHHHCCCC
NLLDKDTTRKDVPSLRLGTVTILQDTASVFQDGQTAEYQMVMTVNASVLIPGHDIYPIST
CCCCCCCCCCCCCCEEECEEEEHHHHHHHHCCCCCCCEEEEEEECCEEEECCCCCCCCHH
KVYRSFFDNPQMALAKDNEQAMIVQEMYDKAAEQLIRKLTSVRAADIQATKEEATADNET
HHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
AAPASTPARVSTTLSN
CCCCCCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA