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The map label for this gene is ybeF [H]

Identifier: 16764011

GI number: 16764011

Start: 696033

End: 696986

Strand: Reverse

Name: ybeF [H]

Synonym: STM0634

Alternate gene names: 16764011

Gene position: 696986-696033 (Counterclockwise)

Preceding gene: 39546300

Following gene: 16764010

Centisome position: 14.35

GC content: 50.94

Gene sequence:

>954_bases
GTGAGTGATAATAATCAGGCAGAAAGACAACCGGCCGATCAACACCTACAGGACAAACCGCAAATTTTCAGAACACTGAG
AAATATTGACCTCAATCTGTTGACGATTTTCGAGGCCGTATATGTCCATAAAGGGATCGTCAATGCAGCGAAAATTCTTA
ACCTGACGCCGTCAGCCATTAGCCAGTCCATTCAAAAATTACGGACTATATTTCCCGATCCGCTGTTTATTCGCAAAGGC
CAGGGCGTAACGCCCACGACGTATGCTACGCATCTGCACGAATACATCAGCCAGGGGCTGGAATCTATTCTTGGCGCCCT
GGATCTTACGGGCAGCTATGATAAGCAACGCACCATTACAATTGGCACGACGCCTTCGGTCGGCGCGCTAGTGATGCCGA
TTATTTACCAGGCCATCAGGCCGCGTTATCCTCAGCTTTTGCTGCGCAACATTCCGGTAGACGATGCCGAAAGCCAGCTT
AGTCAGTTTCAGACCGATCTCATTATCAATACCCATAGCTATAACAACCGGAGCATCCAGCATCACGTCCTGTTTAGCGA
TACGCTTGAGATTGTCTGCCGCCAGCATCACCCGTGTCTGGCGAACGCCATTACTGAAGAGAGACTGAACAGCGCGGATC
ACACCTTTCTGATGCTGGAGGGACAACATCTTTCCCTGCTGCGCCAGCGACTGCAGGAGACATTTCCCGATCAGCAAATC
AGTTTTAGCAGCTACAATATTTTTACCATTGCCTCGCTGATCGCCAGCAGCGATCTGCTGGGACTGATGCCCACCCGCTT
CTACGACTTATTTAGCCGCTGCTGGCCGCTTGAGCGCCTTCCCTACGCGCCGGTGAATAGTGAACAGGTCGAGTTCTCGC
TGCATTACAATAAACTGAGTCTGCGCGATCCGGTGCTGGAGAACGTCATTGATATCATCCGTGAGGCGTTCTGA

Upstream 100 bases:

>100_bases
TAAAAATACATTCATAAGAGTAATTTTAAAACCAACCCATAAATGCAAAATATACTATTTCATCTATTATTCATAATACG
AATGAATTCGGAGCCAGAGC

Downstream 100 bases:

>100_bases
CAAAAATGTTGCATTCAGGTCACGGAAGATATGGGCAAACAGCACAAAACAACAACTATTTTACATTTTGCCGGGCTGTC
AGGCTGCTTTATGGCCCTTA

Product: DNA-binding transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 317; Mature: 316

Protein sequence:

>317_residues
MSDNNQAERQPADQHLQDKPQIFRTLRNIDLNLLTIFEAVYVHKGIVNAAKILNLTPSAISQSIQKLRTIFPDPLFIRKG
QGVTPTTYATHLHEYISQGLESILGALDLTGSYDKQRTITIGTTPSVGALVMPIIYQAIRPRYPQLLLRNIPVDDAESQL
SQFQTDLIINTHSYNNRSIQHHVLFSDTLEIVCRQHHPCLANAITEERLNSADHTFLMLEGQHLSLLRQRLQETFPDQQI
SFSSYNIFTIASLIASSDLLGLMPTRFYDLFSRCWPLERLPYAPVNSEQVEFSLHYNKLSLRDPVLENVIDIIREAF

Sequences:

>Translated_317_residues
MSDNNQAERQPADQHLQDKPQIFRTLRNIDLNLLTIFEAVYVHKGIVNAAKILNLTPSAISQSIQKLRTIFPDPLFIRKG
QGVTPTTYATHLHEYISQGLESILGALDLTGSYDKQRTITIGTTPSVGALVMPIIYQAIRPRYPQLLLRNIPVDDAESQL
SQFQTDLIINTHSYNNRSIQHHVLFSDTLEIVCRQHHPCLANAITEERLNSADHTFLMLEGQHLSLLRQRLQETFPDQQI
SFSSYNIFTIASLIASSDLLGLMPTRFYDLFSRCWPLERLPYAPVNSEQVEFSLHYNKLSLRDPVLENVIDIIREAF
>Mature_316_residues
SDNNQAERQPADQHLQDKPQIFRTLRNIDLNLLTIFEAVYVHKGIVNAAKILNLTPSAISQSIQKLRTIFPDPLFIRKGQ
GVTPTTYATHLHEYISQGLESILGALDLTGSYDKQRTITIGTTPSVGALVMPIIYQAIRPRYPQLLLRNIPVDDAESQLS
QFQTDLIINTHSYNNRSIQHHVLFSDTLEIVCRQHHPCLANAITEERLNSADHTFLMLEGQHLSLLRQRLQETFPDQQIS
FSSYNIFTIASLIASSDLLGLMPTRFYDLFSRCWPLERLPYAPVNSEQVEFSLHYNKLSLRDPVLENVIDIIREAF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081766, Length=317, Percent_Identity=68.7697160883281, Blast_Score=461, Evalue=1e-131,
Organism=Escherichia coli, GI1786820, Length=299, Percent_Identity=30.1003344481605, Blast_Score=132, Evalue=2e-32,
Organism=Escherichia coli, GI87081684, Length=290, Percent_Identity=23.7931034482759, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1787601, Length=249, Percent_Identity=26.9076305220884, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1790147, Length=296, Percent_Identity=24.3243243243243, Blast_Score=66, Evalue=4e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 36179; Mature: 36048

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDNNQAERQPADQHLQDKPQIFRTLRNIDLNLLTIFEAVYVHKGIVNAAKILNLTPSAI
CCCCCCCCCCCHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
SQSIQKLRTIFPDPLFIRKGQGVTPTTYATHLHEYISQGLESILGALDLTGSYDKQRTIT
HHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEE
IGTTPSVGALVMPIIYQAIRPRYPQLLLRNIPVDDAESQLSQFQTDLIINTHSYNNRSIQ
ECCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHEEEECCCCCCCCE
HHVLFSDTLEIVCRQHHPCLANAITEERLNSADHTFLMLEGQHLSLLRQRLQETFPDQQI
EEHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHCCCCCC
SFSSYNIFTIASLIASSDLLGLMPTRFYDLFSRCWPLERLPYAPVNSEQVEFSLHYNKLS
CCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCC
LRDPVLENVIDIIREAF
CCCHHHHHHHHHHHHCC
>Mature Secondary Structure 
SDNNQAERQPADQHLQDKPQIFRTLRNIDLNLLTIFEAVYVHKGIVNAAKILNLTPSAI
CCCCCCCCCCHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
SQSIQKLRTIFPDPLFIRKGQGVTPTTYATHLHEYISQGLESILGALDLTGSYDKQRTIT
HHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEE
IGTTPSVGALVMPIIYQAIRPRYPQLLLRNIPVDDAESQLSQFQTDLIINTHSYNNRSIQ
ECCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHEEEECCCCCCCCE
HHVLFSDTLEIVCRQHHPCLANAITEERLNSADHTFLMLEGQHLSLLRQRLQETFPDQQI
EEHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHCCCCCC
SFSSYNIFTIASLIASSDLLGLMPTRFYDLFSRCWPLERLPYAPVNSEQVEFSLHYNKLS
CCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCC
LRDPVLENVIDIIREAF
CCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8444795; 8905232; 9278503 [H]