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The map label for this gene is cspE [H]

Identifier: 16764006

GI number: 16764006

Start: 692915

End: 693124

Strand: Direct

Name: cspE [H]

Synonym: STM0629

Alternate gene names: 16764006

Gene position: 692915-693124 (Clockwise)

Preceding gene: 16764005

Following gene: 16764008

Centisome position: 14.27

GC content: 43.81

Gene sequence:

>210_bases
ATGTCTAAGATTAAAGGTAACGTTAAGTGGTTTAATGAATCCAAAGGATTCGGTTTCATTACTCCGGAAGATGGCAGCAA
AGACGTGTTTGTACACTTCTCTGCAATCCAGACCAATGGTTTTAAAACTCTGGCTGAAGGTCAGCGCGTAGAGTTCGAAA
TCACTAACGGTGCCAAAGGCCCTTCCGCTGCAAACGTAACTGCTCTGTAA

Upstream 100 bases:

>100_bases
TCACTTTTTCGCAAAGTTCGACTGGACAAAATGCATCACAATTGTTGTACTGGTATCCGACACAGCATTTGTGTCTATTT
TTCATGTAAAGGTAATTTTG

Downstream 100 bases:

>100_bases
GCATACGTCCGACAGCAAGATTTCAAAACCCGCCCTTTCGGCGGGTTTTTTTTGCGCTTAACGCGCCGCTGCGGCGGAAA
ATAGCCAGAATGCCAGCGCC

Product: cold shock protein CspE

Products: NA

Alternate protein names: CSP-E [H]

Number of amino acids: Translated: 69; Mature: 68

Protein sequence:

>69_residues
MSKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKGPSAANVTAL

Sequences:

>Translated_69_residues
MSKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKGPSAANVTAL
>Mature_68_residues
SKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKGPSAANVTAL

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Homo sapiens, GI224586882, Length=70, Percent_Identity=45.7142857142857, Blast_Score=65, Evalue=1e-11,
Organism=Homo sapiens, GI224586884, Length=70, Percent_Identity=45.7142857142857, Blast_Score=65, Evalue=2e-11,
Organism=Homo sapiens, GI34098946, Length=70, Percent_Identity=45.7142857142857, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1786841, Length=69, Percent_Identity=98.5507246376812, Blast_Score=138, Evalue=7e-35,
Organism=Escherichia coli, GI1788126, Length=69, Percent_Identity=84.0579710144928, Blast_Score=120, Evalue=2e-29,
Organism=Escherichia coli, GI1789979, Length=67, Percent_Identity=71.6417910447761, Blast_Score=103, Evalue=2e-24,
Organism=Escherichia coli, GI1787834, Length=68, Percent_Identity=72.0588235294118, Blast_Score=101, Evalue=1e-23,
Organism=Escherichia coli, GI2367114, Length=68, Percent_Identity=67.6470588235294, Blast_Score=100, Evalue=2e-23,
Organism=Escherichia coli, GI1787839, Length=65, Percent_Identity=69.2307692307692, Blast_Score=96, Evalue=3e-22,
Organism=Escherichia coli, GI1787107, Length=65, Percent_Identity=50.7692307692308, Blast_Score=79, Evalue=6e-17,
Organism=Escherichia coli, GI2367112, Length=64, Percent_Identity=50, Blast_Score=63, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17533635, Length=70, Percent_Identity=44.2857142857143, Blast_Score=62, Evalue=5e-11,
Organism=Drosophila melanogaster, GI24658520, Length=63, Percent_Identity=49.2063492063492, Blast_Score=72, Evalue=6e-14,
Organism=Drosophila melanogaster, GI24663131, Length=70, Percent_Identity=47.1428571428571, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7451; Mature: 7320

Theoretical pI: Translated: 9.24; Mature: 9.24

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKG
CCCCCCCEEEEECCCCEEEECCCCCCCEEEEEEEEEECCCCEECCCCCEEEEEECCCCCC
PSAANVTAL
CCCCEEEEC
>Mature Secondary Structure 
SKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKG
CCCCCCEEEEECCCCEEEECCCCCCCEEEEEEEEEECCCCEECCCCCEEEEEECCCCCC
PSAANVTAL
CCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10993077 [H]