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The map label for this gene is ybdG [H]

Identifier: 16763946

GI number: 16763946

Start: 625635

End: 626882

Strand: Reverse

Name: ybdG [H]

Synonym: STM0569

Alternate gene names: 16763946

Gene position: 626882-625635 (Counterclockwise)

Preceding gene: 16763949

Following gene: 16763944

Centisome position: 12.91

GC content: 49.52

Gene sequence:

>1248_bases
ATGCAGGAATTGATATCCCGGGTAGAAGATTTAGCGGGAATTGAAATGAATCACACCACGTCGCTGGTGGTGATATTTGG
TATTATTTTTCTGACAGCAGTTGTCGTGCATATTATTTTGCACTGGATAGTACTGCGCGCTTTCGAAAAACGTGCCAGCG
CCAGTTCCCGCCTGTGGCTGCAAATTATTACCCAGAATAAATTATTCCATCGTCTGGCTTTTACGCTGCAAGGCATCATT
GTCAATATTCAGGCCGCGCTCTGGCTACAAAAAGGCAGTGAGGCTGCGGATATCCTGACGACCTGCGCGCAGTTATGGAT
TATGACCTACGCCCTGCTGTCGTTATTTTCCTTGCTGGACGTGATTTTCAATCTATCGCAAAAATGGCCCGCCGCCTCTC
AGTTACCGCTAAAAGGAATATTTCAGGGTATTAAGCTCATCGGCGCAATTATCGTCGGCATTCTGATGATCTCACTGCTG
ATTGGCCAGTCACCAGCAATTTTAATCAGCGGGCTGGGCGCGATGGCCGCGGTATTAATGCTGGTCTTTAAAGACCCGAT
TCTTGGCCTGGTTGCCGGTATCCAGCTTTCCGCCAACGATATGCTCAAACTGGGCGACTGGCTGGAAATGCCGAAATATG
GCGCAGATGGCGCGGTCATTGATATTGGCTTAACCACGGTAAAAGTACGCAACTGGGATAATACCATCACCACCATTCCC
ACCTGGTCGCTGGTTTCCGACTCATTCAAAAACTGGAGCGGCATGTCTGCGTCCGGCGGACGCCGGATTAAACGCAGCAT
TAATATTGACGCGACCAGTATCCATTTTCTGGATGATGATGAAAAACAGCGGCTGTTAACCGCGCAACTGTTAAAGCCGT
ACCTTACCAGCCGTCATCAGGAAATCGATGAATGGAATAAACAACTGGATGCGCCGGAATCAGCCTTAAATCACCGCCGC
ATGACCAATATCGGGACATTTCGCGCCTATCTGAACGAATATTTACGCCACCATCCGCGCATCCGTAAAGACATGACGCT
GATGGTACGCCAACTGGCGCCTGACGATCATGGTTTGCCGATAGAGATCTACGCCTTTACCAATACCGTCGTGTGGCTGG
AATATGAGAGCATTCAGGCCGATATTTTCGACCATATTTTTGCCGTGGTGGAAGAGTTTGGCTTGCGTATTCATCAGACG
CCGACCGGCAGCGATATTCGCGCGCTGTCAGGGACATTGCGGCATTAA

Upstream 100 bases:

>100_bases
TTACCCGTCTGTTGCTGATTATGCCTGAAGCGCAGGCGTCCTGATTTGCATAAATGCCATTCAGCAGTCATCATAGGCTG
CTGTTTATAAAGGAGAGATT

Downstream 100 bases:

>100_bases
TGGATTGCCCGATCGCATGAACATGGGATCGGGCAAAAAAGTTAATGAGCCTTACGGCGCAAAACGGTAAACGCGATAAA
CAGGAATACAATCCATACCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 415; Mature: 415

Protein sequence:

>415_residues
MQELISRVEDLAGIEMNHTTSLVVIFGIIFLTAVVVHIILHWIVLRAFEKRASASSRLWLQIITQNKLFHRLAFTLQGII
VNIQAALWLQKGSEAADILTTCAQLWIMTYALLSLFSLLDVIFNLSQKWPAASQLPLKGIFQGIKLIGAIIVGILMISLL
IGQSPAILISGLGAMAAVLMLVFKDPILGLVAGIQLSANDMLKLGDWLEMPKYGADGAVIDIGLTTVKVRNWDNTITTIP
TWSLVSDSFKNWSGMSASGGRRIKRSINIDATSIHFLDDDEKQRLLTAQLLKPYLTSRHQEIDEWNKQLDAPESALNHRR
MTNIGTFRAYLNEYLRHHPRIRKDMTLMVRQLAPDDHGLPIEIYAFTNTVVWLEYESIQADIFDHIFAVVEEFGLRIHQT
PTGSDIRALSGTLRH

Sequences:

>Translated_415_residues
MQELISRVEDLAGIEMNHTTSLVVIFGIIFLTAVVVHIILHWIVLRAFEKRASASSRLWLQIITQNKLFHRLAFTLQGII
VNIQAALWLQKGSEAADILTTCAQLWIMTYALLSLFSLLDVIFNLSQKWPAASQLPLKGIFQGIKLIGAIIVGILMISLL
IGQSPAILISGLGAMAAVLMLVFKDPILGLVAGIQLSANDMLKLGDWLEMPKYGADGAVIDIGLTTVKVRNWDNTITTIP
TWSLVSDSFKNWSGMSASGGRRIKRSINIDATSIHFLDDDEKQRLLTAQLLKPYLTSRHQEIDEWNKQLDAPESALNHRR
MTNIGTFRAYLNEYLRHHPRIRKDMTLMVRQLAPDDHGLPIEIYAFTNTVVWLEYESIQADIFDHIFAVVEEFGLRIHQT
PTGSDIRALSGTLRH
>Mature_415_residues
MQELISRVEDLAGIEMNHTTSLVVIFGIIFLTAVVVHIILHWIVLRAFEKRASASSRLWLQIITQNKLFHRLAFTLQGII
VNIQAALWLQKGSEAADILTTCAQLWIMTYALLSLFSLLDVIFNLSQKWPAASQLPLKGIFQGIKLIGAIIVGILMISLL
IGQSPAILISGLGAMAAVLMLVFKDPILGLVAGIQLSANDMLKLGDWLEMPKYGADGAVIDIGLTTVKVRNWDNTITTIP
TWSLVSDSFKNWSGMSASGGRRIKRSINIDATSIHFLDDDEKQRLLTAQLLKPYLTSRHQEIDEWNKQLDAPESALNHRR
MTNIGTFRAYLNEYLRHHPRIRKDMTLMVRQLAPDDHGLPIEIYAFTNTVVWLEYESIQADIFDHIFAVVEEFGLRIHQT
PTGSDIRALSGTLRH

Specific function: Mechanosensitive channel of miniconductance that confers protection against mild hypoosmotic shock. Overexpression confers protection against severe shocks [H]

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mscS (TC 1.A.23) family [H]

Homologues:

Organism=Escherichia coli, GI1786791, Length=415, Percent_Identity=88.433734939759, Blast_Score=755, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR011066
- InterPro:   IPR006685 [H]

Pfam domain/function: PF00924 MS_channel [H]

EC number: NA

Molecular weight: Translated: 46595; Mature: 46595

Theoretical pI: Translated: 7.50; Mature: 7.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQELISRVEDLAGIEMNHTTSLVVIFGIIFLTAVVVHIILHWIVLRAFEKRASASSRLWL
CHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
QIITQNKLFHRLAFTLQGIIVNIQAALWLQKGSEAADILTTCAQLWIMTYALLSLFSLLD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
VIFNLSQKWPAASQLPLKGIFQGIKLIGAIIVGILMISLLIGQSPAILISGLGAMAAVLM
HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
LVFKDPILGLVAGIQLSANDMLKLGDWLEMPKYGADGAVIDIGLTTVKVRNWDNTITTIP
HHHHCHHHHHHHCCEECCCHHHHHHHHHHCCCCCCCCCEEEECEEEEEEECCCCCEEECC
TWSLVSDSFKNWSGMSASGGRRIKRSINIDATSIHFLDDDEKQRLLTAQLLKPYLTSRHQ
CHHHHHHHHCCCCCCCCCCCHHHHHEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHH
EIDEWNKQLDAPESALNHRRMTNIGTFRAYLNEYLRHHPRIRKDMTLMVRQLAPDDHGLP
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCC
IEIYAFTNTVVWLEYESIQADIFDHIFAVVEEFGLRIHQTPTGSDIRALSGTLRH
EEEEEEECEEEEEEEHHHHHHHHHHHHHHHHHHCCEEECCCCCCHHHHHHHCCCC
>Mature Secondary Structure
MQELISRVEDLAGIEMNHTTSLVVIFGIIFLTAVVVHIILHWIVLRAFEKRASASSRLWL
CHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
QIITQNKLFHRLAFTLQGIIVNIQAALWLQKGSEAADILTTCAQLWIMTYALLSLFSLLD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
VIFNLSQKWPAASQLPLKGIFQGIKLIGAIIVGILMISLLIGQSPAILISGLGAMAAVLM
HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
LVFKDPILGLVAGIQLSANDMLKLGDWLEMPKYGADGAVIDIGLTTVKVRNWDNTITTIP
HHHHCHHHHHHHCCEECCCHHHHHHHHHHCCCCCCCCCEEEECEEEEEEECCCCCEEECC
TWSLVSDSFKNWSGMSASGGRRIKRSINIDATSIHFLDDDEKQRLLTAQLLKPYLTSRHQ
CHHHHHHHHCCCCCCCCCCCHHHHHEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHH
EIDEWNKQLDAPESALNHRRMTNIGTFRAYLNEYLRHHPRIRKDMTLMVRQLAPDDHGLP
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCC
IEIYAFTNTVVWLEYESIQADIFDHIFAVVEEFGLRIHQTPTGSDIRALSGTLRH
EEEEEEECEEEEEEEHHHHHHHHHHHHHHHHHHCCEEECCCCCCHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 7813889 [H]