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The map label for this gene is priC [H]

Identifier: 16763861

GI number: 16763861

Start: 539116

End: 539631

Strand: Reverse

Name: priC [H]

Synonym: STM0481

Alternate gene names: 16763861

Gene position: 539631-539116 (Counterclockwise)

Preceding gene: 16763870

Following gene: 16763860

Centisome position: 11.11

GC content: 59.69

Gene sequence:

>516_bases
ATGCTGTTACAGACGCTGGAAGAGAGGCTGGCGACGCTACGCCAACGCTGCGCGCCGCTGGCGCAACATGCGACGTTAAG
CGCGCGCTTTGACCGACACCTTTTCCGTACCCGCAGTACTCTGTTGCAGGGATATCTGGAAGAGGCAGGCGCCAATCTCG
TCGCGTTGCGTCAGGCGGTAAAACATGAGCAACTGCCGCAAGTCGCCTGGCTGGCGGAACATCTGGCTTCGCAACTGGAG
GCGATATCGCGTGAAACCGCCGCCTGGTCGCTGCGCCAGTGGGACGCCGCCGCGCCAGGGCTTGGCCGTTGGCAGCGCAG
ACGAATACAGCATCAGGAGTTTGAACGTCGACTACTGGCGATGACACAGGAGCGCAAAATTCGTCTGGCGCAGGCGACCG
GCCTTGTCGAACAACAAACGCTGCAAAAGGAAGTCGAGATCTATGAAGGACGGCTGGCGCGTTGCCGACATGCGCTGGAG
AAAATAGAAAACGTACTGGCGCGTTTAACCCGCTAA

Upstream 100 bases:

>100_bases
ATTAAAATAGTACGTTGCATAATGCGAATCGTTATCAAACAGAAGGCTACTGTAGCACAGCCTGTCTTATTTTCATCGGG
GTGTTGAATTGAAAACCGCT

Downstream 100 bases:

>100_bases
CCCTGGAGAAAGTATGTCGCTTGAAAATGCCCCTGATGAAGTCAAACTGGCCGTGGATTTAATTGTGCTGCTTGAAGAGA
ATCGCTTACCGGCACGAACG

Product: primosomal replication protein N''

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 171; Mature: 171

Protein sequence:

>171_residues
MLLQTLEERLATLRQRCAPLAQHATLSARFDRHLFRTRSTLLQGYLEEAGANLVALRQAVKHEQLPQVAWLAEHLASQLE
AISRETAAWSLRQWDAAAPGLGRWQRRRIQHQEFERRLLAMTQERKIRLAQATGLVEQQTLQKEVEIYEGRLARCRHALE
KIENVLARLTR

Sequences:

>Translated_171_residues
MLLQTLEERLATLRQRCAPLAQHATLSARFDRHLFRTRSTLLQGYLEEAGANLVALRQAVKHEQLPQVAWLAEHLASQLE
AISRETAAWSLRQWDAAAPGLGRWQRRRIQHQEFERRLLAMTQERKIRLAQATGLVEQQTLQKEVEIYEGRLARCRHALE
KIENVLARLTR
>Mature_171_residues
MLLQTLEERLATLRQRCAPLAQHATLSARFDRHLFRTRSTLLQGYLEEAGANLVALRQAVKHEQLPQVAWLAEHLASQLE
AISRETAAWSLRQWDAAAPGLGRWQRRRIQHQEFERRLLAMTQERKIRLAQATGLVEQQTLQKEVEIYEGRLARCRHALE
KIENVLARLTR

Specific function: PriA recognizes a specific hairpin sequence on bacteriophage phi X174 ssDNA. This structure is then recognized and bound by proteins priB and priC. Formation of the primosome proceeds with the subsequent actions of dnaB, dnaC, dnaT and primase [H]

COG id: COG3923

COG function: function code L; Primosomal replication protein N''

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786673, Length=171, Percent_Identity=73.0994152046784, Blast_Score=248, Evalue=1e-67,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010890 [H]

Pfam domain/function: PF07445 priB_priC [H]

EC number: NA

Molecular weight: Translated: 19874; Mature: 19874

Theoretical pI: Translated: 11.02; Mature: 11.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLQTLEERLATLRQRCAPLAQHATLSARFDRHLFRTRSTLLQGYLEEAGANLVALRQAV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
KHEQLPQVAWLAEHLASQLEAISRETAAWSLRQWDAAAPGLGRWQRRRIQHQEFERRLLA
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
MTQERKIRLAQATGLVEQQTLQKEVEIYEGRLARCRHALEKIENVLARLTR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLLQTLEERLATLRQRCAPLAQHATLSARFDRHLFRTRSTLLQGYLEEAGANLVALRQAV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
KHEQLPQVAWLAEHLASQLEAISRETAAWSLRQWDAAAPGLGRWQRRRIQHQEFERRLLA
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
MTQERKIRLAQATGLVEQQTLQKEVEIYEGRLARCRHALEKIENVLARLTR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1856227; 9278503 [H]