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The map label for this gene is cydA [H]

Identifier: 16763740

GI number: 16763740

Start: 408766

End: 410169

Strand: Direct

Name: cydA [H]

Synonym: STM0360

Alternate gene names: 16763740

Gene position: 408766-410169 (Clockwise)

Preceding gene: 16763739

Following gene: 16763741

Centisome position: 8.42

GC content: 55.41

Gene sequence:

>1404_bases
ATGGAGTTTGATGCCTTCTTTTTAGCGAGACTCCAGTTTGCCTTTACCGTCTCTTTTCATATTATTTTCCCCGCGATTAC
GATTGGCTTAGCCAGTTACCTGGTGGTACTGGAAGGTTTATGGCTAAAAACGCGTAATCCTGTCTGGCGCTCGCTCTATC
AGTTCTGGCTCAAAATTTTTGCCGTCAACTTCGGGATGGGCGTGGTCTCCGGTCTGGTCATGGCTTACCAGTTCGGAACG
AACTGGAGCGGTTTTTCCCAGTTCGCCGGCAGTATCACCGGGCCTTTATTAACCTATGAAGTGCTCACCGCATTCTTCCT
GGAAGCGGGATTCTTAGGCGTGATGCTTTTTGGCTGGAACAAAGTCGGGCCGGGTCTGCATTTCTTGTCTACCTGTATGG
TGGCGTTGGGCACGTTAATGTCGACGTTCTGGATTCTGGCGTCTAACAGCTGGATGCATACCCCGCAGGGATTTGAAATT
CACAACGGTCAGGTAGTCCCGGTGGACTGGTTCGCGGTGATTTTCAACCCGTCGTTCCCGTATCGCCTGTTGCATATGTC
CGTTGCGGCGTTTTTAAGTAGCGCGATGTTTGTCGGCGCGTCCGCTGCCTGGCATTTACTGAAAGGTAACGATACGCCGG
CTATCCGCCGTATGTTCTCGATGGCGTTATGGATGGCGGTCGTGGTGGCGCCCGTTCAGGCATTGATTGGCGATATGCAT
GGCCTTAACACCCTGAAGCATCAGCCGGTCAAAATCGCCGCGATTGAGGGGCACTGGGAAAATACGCCCGGCGAGCCAAC
GCCGCTTACGCTGGTAGGCTGGCCGGATATGGAGGCGGAACGGACCCGCTATGCGCTTGAGATCCCGGCGTTGGGCAGTC
TGATCCTGACGCATAGCCTGGACAAACAGGTGCCTGCGCTAAAAGATTATCCCAAAGAGGATCGCCCCAACTCTACCGTG
GTGTTCTGGTCTTTCCGTCTGATGGTGGGCATGGGCGTACTGATGATCTTCCTGGGGCTGGCCAGCCTGTGGCTACGCTA
CCGACGCCGACTGTATCATTCGCGGCCCTTTATGCACTTTGCGCTGTGGATGGGGCCGTCCGGGCTTATCGCCATCCTTG
CCGGATGGGTGACGACGGAAGTAGGACGCCAGCCGTGGGTGGTCTATGGCCTGCTGCGAACGCGTGATGCGGTTTCCGCG
CACAGTACCTTGCAGATGAGCATCAGTTTGCTGGCCTTCTTTGTGGTCTATTCCCTGGTCTTTGGGGTTGGCTATATTTA
TATGATTCGCCTTATCCAGAAAGGGCCGCAGCCGGCGGAGACACCGACCGCTGAAACCGATGGCAGACCCGCGCGTCCTA
TCTCTGCCGTGGGAGAATCGCTTGAGCAGGAGAAACGCGAATGA

Upstream 100 bases:

>100_bases
CCGACGTTTATACGTTTGGGGAAAATAACCGTTTCGTTTCAACCTGGTTGCGAACAGTGAATATTTTACACGAAGTGACT
ATATATAAACGGGAGGGAAC

Downstream 100 bases:

>100_bases
CCATCGATCTTCCGGTTATCTGGTTTGCTATTATCGTGTTCGCCACGCTGATGTATATCGTAATGGATGGGTTCGATCTG
GGCGTCGGTATCCTGTTTCC

Product: cytochrome BD2 subunit I

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 467; Mature: 467

Protein sequence:

>467_residues
MEFDAFFLARLQFAFTVSFHIIFPAITIGLASYLVVLEGLWLKTRNPVWRSLYQFWLKIFAVNFGMGVVSGLVMAYQFGT
NWSGFSQFAGSITGPLLTYEVLTAFFLEAGFLGVMLFGWNKVGPGLHFLSTCMVALGTLMSTFWILASNSWMHTPQGFEI
HNGQVVPVDWFAVIFNPSFPYRLLHMSVAAFLSSAMFVGASAAWHLLKGNDTPAIRRMFSMALWMAVVVAPVQALIGDMH
GLNTLKHQPVKIAAIEGHWENTPGEPTPLTLVGWPDMEAERTRYALEIPALGSLILTHSLDKQVPALKDYPKEDRPNSTV
VFWSFRLMVGMGVLMIFLGLASLWLRYRRRLYHSRPFMHFALWMGPSGLIAILAGWVTTEVGRQPWVVYGLLRTRDAVSA
HSTLQMSISLLAFFVVYSLVFGVGYIYMIRLIQKGPQPAETPTAETDGRPARPISAVGESLEQEKRE

Sequences:

>Translated_467_residues
MEFDAFFLARLQFAFTVSFHIIFPAITIGLASYLVVLEGLWLKTRNPVWRSLYQFWLKIFAVNFGMGVVSGLVMAYQFGT
NWSGFSQFAGSITGPLLTYEVLTAFFLEAGFLGVMLFGWNKVGPGLHFLSTCMVALGTLMSTFWILASNSWMHTPQGFEI
HNGQVVPVDWFAVIFNPSFPYRLLHMSVAAFLSSAMFVGASAAWHLLKGNDTPAIRRMFSMALWMAVVVAPVQALIGDMH
GLNTLKHQPVKIAAIEGHWENTPGEPTPLTLVGWPDMEAERTRYALEIPALGSLILTHSLDKQVPALKDYPKEDRPNSTV
VFWSFRLMVGMGVLMIFLGLASLWLRYRRRLYHSRPFMHFALWMGPSGLIAILAGWVTTEVGRQPWVVYGLLRTRDAVSA
HSTLQMSISLLAFFVVYSLVFGVGYIYMIRLIQKGPQPAETPTAETDGRPARPISAVGESLEQEKRE
>Mature_467_residues
MEFDAFFLARLQFAFTVSFHIIFPAITIGLASYLVVLEGLWLKTRNPVWRSLYQFWLKIFAVNFGMGVVSGLVMAYQFGT
NWSGFSQFAGSITGPLLTYEVLTAFFLEAGFLGVMLFGWNKVGPGLHFLSTCMVALGTLMSTFWILASNSWMHTPQGFEI
HNGQVVPVDWFAVIFNPSFPYRLLHMSVAAFLSSAMFVGASAAWHLLKGNDTPAIRRMFSMALWMAVVVAPVQALIGDMH
GLNTLKHQPVKIAAIEGHWENTPGEPTPLTLVGWPDMEAERTRYALEIPALGSLILTHSLDKQVPALKDYPKEDRPNSTV
VFWSFRLMVGMGVLMIFLGLASLWLRYRRRLYHSRPFMHFALWMGPSGLIAILAGWVTTEVGRQPWVVYGLLRTRDAVSA
HSTLQMSISLLAFFVVYSLVFGVGYIYMIRLIQKGPQPAETPTAETDGRPARPISAVGESLEQEKRE

Specific function: Cytochrome Oxidase Subunit. [C]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI1787212, Length=316, Percent_Identity=38.2911392405063, Blast_Score=239, Evalue=2e-64,
Organism=Escherichia coli, GI87081779, Length=523, Percent_Identity=30.019120458891, Blast_Score=238, Evalue=6e-64,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 52288; Mature: 52288

Theoretical pI: Translated: 9.34; Mature: 9.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEFDAFFLARLQFAFTVSFHIIFPAITIGLASYLVVLEGLWLKTRNPVWRSLYQFWLKIF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
AVNFGMGVVSGLVMAYQFGTNWSGFSQFAGSITGPLLTYEVLTAFFLEAGFLGVMLFGWN
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCC
KVGPGLHFLSTCMVALGTLMSTFWILASNSWMHTPQGFEIHNGQVVPVDWFAVIFNPSFP
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCEECCCEEEEEEEEEEEECCCCC
YRLLHMSVAAFLSSAMFVGASAAWHLLKGNDTPAIRRMFSMALWMAVVVAPVQALIGDMH
HHHHHHHHHHHHHHHHHHCCHHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLNTLKHQPVKIAAIEGHWENTPGEPTPLTLVGWPDMEAERTRYALEIPALGSLILTHSL
CCCHHCCCCEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCEEEEECCCHHHHHHHHHH
DKQVPALKDYPKEDRPNSTVVFWSFRLMVGMGVLMIFLGLASLWLRYRRRLYHSRPFMHF
HHCCCCHHCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEE
ALWMGPSGLIAILAGWVTTEVGRQPWVVYGLLRTRDAVSAHSTLQMSISLLAFFVVYSLV
HHHCCCCHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FGVGYIYMIRLIQKGPQPAETPTAETDGRPARPISAVGESLEQEKRE
HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MEFDAFFLARLQFAFTVSFHIIFPAITIGLASYLVVLEGLWLKTRNPVWRSLYQFWLKIF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
AVNFGMGVVSGLVMAYQFGTNWSGFSQFAGSITGPLLTYEVLTAFFLEAGFLGVMLFGWN
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCC
KVGPGLHFLSTCMVALGTLMSTFWILASNSWMHTPQGFEIHNGQVVPVDWFAVIFNPSFP
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCEECCCEEEEEEEEEEEECCCCC
YRLLHMSVAAFLSSAMFVGASAAWHLLKGNDTPAIRRMFSMALWMAVVVAPVQALIGDMH
HHHHHHHHHHHHHHHHHHCCHHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLNTLKHQPVKIAAIEGHWENTPGEPTPLTLVGWPDMEAERTRYALEIPALGSLILTHSL
CCCHHCCCCEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCEEEEECCCHHHHHHHHHH
DKQVPALKDYPKEDRPNSTVVFWSFRLMVGMGVLMIFLGLASLWLRYRRRLYHSRPFMHF
HHCCCCHHCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEE
ALWMGPSGLIAILAGWVTTEVGRQPWVVYGLLRTRDAVSAHSTLQMSISLLAFFVVYSLV
HHHCCCCHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FGVGYIYMIRLIQKGPQPAETPTAETDGRPARPISAVGESLEQEKRE
HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]