Click here to switch to the map view.

The map label for this gene is 16763663

Identifier: 16763663

GI number: 16763663

Start: 319231

End: 319767

Strand: Direct

Name: 16763663

Synonym: STM0280

Alternate gene names: NA

Gene position: 319231-319767 (Clockwise)

Preceding gene: 16763662

Following gene: 16763664

Centisome position: 6.57

GC content: 52.89

Gene sequence:

>537_bases
GTGAATGAATGGCGTAACCCCACTCGGTGGTTATGTGCGGTAGCTATGCCTTTTGCACTGCTCCTGCTTTCCGGATGCGG
CAGTAGCGATGCGTTACCTGACCTCGAATCACAGCGACTCGACCTGAGCGTGAAAGCCTCCGATAAGGTGAATCCTGACA
ATCAGAAGAAGGCCGCGCCCATTGAGATACGTGTTTATGAACTGAAAAATGACGCCGCTTTCACGACAGCTGATTACTGG
TCGCTCCATGACAACGACAAATCCGTCCTTACCGACGATTTAGTGCGTCGCGACAGCTTTATTTTGCGTCCCGGCGAAGA
GAAAAAACTGCGTCGCCCGCTGAATGCGCAGACCACGGCAATCGGCGTACTGGCCGGATACCGTAACCTGGCCAAATCGG
TCTGGCGGGTAACCTACAAAATCCCGGAAGCCCCGGAAAAAGCCTGGTACAGCAGCTTCATATCGGGGAAAGGAAAAGTG
CAGTTGGAGGCGGAACTGGAACAAAGCGCCATTGTAATTACGGAACGGGATAAATGA

Upstream 100 bases:

>100_bases
AGGCTACGACTTCAAGGCCAACAAAGAAATTTAACGGCTGTTTTTCCGGCCAGATTTATATCTGGCCGGATTTATTATTT
TGATTTTAAAGGAATTTACA

Downstream 100 bases:

>100_bases
ATTATGAGCTGGAATGACCGCGTAGTCTGGAGTGAAGGACAATTTTTACTGCCGCAGATGTTTCAGCAGCAAGAGCGTTA
TCTGGAACACGTCATGCATT

Product: outer membrane lipoprotein

Products: NA

Alternate protein names: Type VI Secretion Lipoprotein; Type VI Secretion Lipoprotein/VasD; SciN Protein; Replication/Virulence Associated Protein; Type VI Secretion System Protein Vasd; Outer Membrane Lipoprotein; Type VI Secretion Protein VasD; Type VI Secretion

Number of amino acids: Translated: 178; Mature: 178

Protein sequence:

>178_residues
MNEWRNPTRWLCAVAMPFALLLLSGCGSSDALPDLESQRLDLSVKASDKVNPDNQKKAAPIEIRVYELKNDAAFTTADYW
SLHDNDKSVLTDDLVRRDSFILRPGEEKKLRRPLNAQTTAIGVLAGYRNLAKSVWRVTYKIPEAPEKAWYSSFISGKGKV
QLEAELEQSAIVITERDK

Sequences:

>Translated_178_residues
MNEWRNPTRWLCAVAMPFALLLLSGCGSSDALPDLESQRLDLSVKASDKVNPDNQKKAAPIEIRVYELKNDAAFTTADYW
SLHDNDKSVLTDDLVRRDSFILRPGEEKKLRRPLNAQTTAIGVLAGYRNLAKSVWRVTYKIPEAPEKAWYSSFISGKGKV
QLEAELEQSAIVITERDK
>Mature_178_residues
MNEWRNPTRWLCAVAMPFALLLLSGCGSSDALPDLESQRLDLSVKASDKVNPDNQKKAAPIEIRVYELKNDAAFTTADYW
SLHDNDKSVLTDDLVRRDSFILRPGEEKKLRRPLNAQTTAIGVLAGYRNLAKSVWRVTYKIPEAPEKAWYSSFISGKGKV
QLEAELEQSAIVITERDK

Specific function: Unknown

COG id: COG3521

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20067; Mature: 20067

Theoretical pI: Translated: 8.19; Mature: 8.19

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNEWRNPTRWLCAVAMPFALLLLSGCGSSDALPDLESQRLDLSVKASDKVNPDNQKKAAP
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCC
IEIRVYELKNDAAFTTADYWSLHDNDKSVLTDDLVRRDSFILRPGEEKKLRRPLNAQTTA
EEEEEEEECCCCEEEEECEEEECCCCCHHHHHHHHHCCCEEECCCCHHHHHCCCCCCHHH
IGVLAGYRNLAKSVWRVTYKIPEAPEKAWYSSFISGKGKVQLEAELEQSAIVITERDK
HHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHCCCCCEEEEEECCCEEEEEEECCC
>Mature Secondary Structure
MNEWRNPTRWLCAVAMPFALLLLSGCGSSDALPDLESQRLDLSVKASDKVNPDNQKKAAP
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCC
IEIRVYELKNDAAFTTADYWSLHDNDKSVLTDDLVRRDSFILRPGEEKKLRRPLNAQTTA
EEEEEEEECCCCEEEEECEEEECCCCCHHHHHHHHHCCCEEECCCCHHHHHCCCCCCHHH
IGVLAGYRNLAKSVWRVTYKIPEAPEKAWYSSFISGKGKVQLEAELEQSAIVITERDK
HHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHCCCCCEEEEEECCCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA