| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is macB [H]
Identifier: 167626195
GI number: 167626195
Start: 5200820
End: 5203228
Strand: Reverse
Name: macB [H]
Synonym: Shal_4290
Alternate gene names: 167626195
Gene position: 5203228-5200820 (Counterclockwise)
Preceding gene: 167626196
Following gene: 167626194
Centisome position: 99.55
GC content: 46.62
Gene sequence:
>2409_bases ATGATAGCGTTGAGTCATATGTTGACTGCCGCCCAGCGCCAATTTGGGCGGGCTAAACAATATTACCTTACGGTCACCCT AAGTTTGGCACTTACCTTAAGTCTGGTATTTAGCGTATTTAGTATCTTAGATGTGGCCTATCTGCAGCCCTTGCCTTATG GCGAAGCCGATGAGTTGTATTATGTTGAGGGAACACTCAACTACCAGCAGCAAATCGTTGTAGGCACTAACACCCAAAAC CTGTTGACTCTGCAGCAGCAACAGAACATATTTTCCGATCTCGCTATTTATTTTAGCTGGAGTGAATATAAGCTACTGGA TTCTCCTGAACGGCCCGATGTTCCGGTAATGTTGGCCTCACATAATTTGTTTGAAGTGTTACAACTTAAGCCTGTATTAG GGCGTTTCTTTAATGTCGATGAGACGATGGGCAACAAGCAGCCATCGGCAATCTTAAGTTATCAGGCTTGGCAGCAACAT TTTGCTGCAGATCCCAGCATCATAGGCAAAAGCGTACAGCTTAATCAGCGTCGCTTCACCATCATCGGCGTGACTCCCGA TAACTTGGTTCTACCCCAGCGCAGTGATGTTGCTCAGGCTATCTGGCTGCCTCTGGATATGGATGAGCAGTTAGACCCCA AAAGCTTTGGTGGCTATGGCAGCGCAATAAAGGCGCTGGGTCGATTACAAACTGGAGTCACTCCAGAGCTTGCCAGTGAG CGCCTTGGCGAGCAGATGCTGGCGGCGGCCAAGTTAAATACGCCAGAGTTAGTTAAAGAGTATGAGCTTTCCGGCCGGTT ACAAGACTTTACTGCCGCGATGCGCGGTGACAGTGGCAAATTGATTGTTATGTTGGTCGGTGGTGTGAGTTTGCTGACTC TAATGGCTTTGATTAACTTGGGTAATTTACAGTTAGCCAGGGCAGTGGGACGAGTACAAACCGTTGCTATCAGTTACGCC TTTGGTGCGACTCGTAAACAGCTATTTAAGGATATTTTTCGTCACAACGGTTTATTGATAGGCTTGGCTTCACTATTCGC ACTGCTGCTCACTAGCTTTGCTTTCAACATGATAGGTTATCTGGGTGAAGAGCTATTGCCACGCCTTGATGCGCTCAGTT TAAATGCCAATATGTTGCTCTTCGCCGTGTTGGTGACTCTGGTCATCGCTTTTGTCTTTAGCTGGATAGAGCTTAAGGCC ATCGATGAATCTCAACTGCAAAGCTGTTTGCAGGCCAGCGGCAAGGGCACGGGCAAGCAGTTATCCAAAGGCGTTAGCCA TGGACTTATCGGCTTGCAATTATTGTTTGCTGTACTCACCTTGGTCGCATCGAGTCAGGTATTGATGGCAAGTTTGAACG AGGCATTAAGACAAAACCATATAATTAGTAAGGATCTTTGGTCCATGGTGGTCAATTACGGCGCCATATCGGACAAGGAG GCCAGAGTTAATTTGCAGCGCGCGGTGAGTGAGCATTTAAGGGCGCAGTCAGGCGTAGTAAGTGTGAGTCGCGCCAGTGA TACCCGCGTTCCCGATACTTTTAATATAGGGCCTATCTATAATGAAATGGGCGATAATATTGCCAATGGTCGAGTCACGG TAATGGATGATAATCAGCTGCCGTTATTTGGTATGCAGATCCAGGGGCGTTTCTTTAGTCGTGAAGATCTGCAACTAGAA TATAAGCCTGTCATTATTAATCAGCGGTTGGCGGCTAAATTTGATGGTGATGCCATTGGTCAGAAGGTGATGAAGCACGA TAAGGTGCCAATGGAGATTGTCGGCGTAGTCAGTAATACCGATTTTCCTGGTAGTGCTAGCTATGAGGCAGATGAGCTAT TTATACCAGGAAATTATTCCGGATATCGCGTCGATACTCTTGTCATTAAGGTTAAGGAAGATCATGCAGGTTTTAATCAA GCCCTGATGTATGCCCAGTTGCTTAAGCTAGATCCTAGGCTGGATATTATGTTACTCAAATCGGTGGATGAGCATTTTGC CAATATCAGTCGTAATCAGCGTTTCTCTGCCTGGCTTGCTGGCGGTATCTCCTTGGTGTCGCTTATCATGGTTCTAGCTG GTATCAATGGCATGATCAGCTATATGGTGAGGATGCGTCGTTATGAACTTGGAGTCAGGCTCGCGATGGGAGCGAGCCAA AAGCTGCTACTGCGCTCTCAACTATTCGAACTAGCTAAACCTATGGCTACGGCTGCGTTATTTGGTTTTTCTATCAGCTA TTTTGTGATTGGTTATAGTCGTACCCAAGTCGACTGGCGTTTTGCCCTCTATTGGCCTGAATTGATCTCCAGCCTAGCGC TGTTACTGGTGTTCGCTGTTATTGTGAGCTTTATTCCTATTTGGCGAATCCTTAAGACTGATCCCATTAAGGCGCTGCGT AACGAATAA
Upstream 100 bases:
>100_bases TTACTCATGATCCCCGCTATGCTCAGATGGCAGATAGACAGATTAACTTACTCGATGGCAAGGTCGTTATCGAAACGGCT GTCAATATCGAGTGTGTCGC
Downstream 100 bases:
>100_bases TCGCAATTTTATCGGTATAAGAGTCATTGCCGTCATCATTAACGTGATGACGGCAAATTTCTGGCTTGAGTTTGAGTGTT ACATTGTTGGCATTATTTTT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 802; Mature: 802
Protein sequence:
>802_residues MIALSHMLTAAQRQFGRAKQYYLTVTLSLALTLSLVFSVFSILDVAYLQPLPYGEADELYYVEGTLNYQQQIVVGTNTQN LLTLQQQQNIFSDLAIYFSWSEYKLLDSPERPDVPVMLASHNLFEVLQLKPVLGRFFNVDETMGNKQPSAILSYQAWQQH FAADPSIIGKSVQLNQRRFTIIGVTPDNLVLPQRSDVAQAIWLPLDMDEQLDPKSFGGYGSAIKALGRLQTGVTPELASE RLGEQMLAAAKLNTPELVKEYELSGRLQDFTAAMRGDSGKLIVMLVGGVSLLTLMALINLGNLQLARAVGRVQTVAISYA FGATRKQLFKDIFRHNGLLIGLASLFALLLTSFAFNMIGYLGEELLPRLDALSLNANMLLFAVLVTLVIAFVFSWIELKA IDESQLQSCLQASGKGTGKQLSKGVSHGLIGLQLLFAVLTLVASSQVLMASLNEALRQNHIISKDLWSMVVNYGAISDKE ARVNLQRAVSEHLRAQSGVVSVSRASDTRVPDTFNIGPIYNEMGDNIANGRVTVMDDNQLPLFGMQIQGRFFSREDLQLE YKPVIINQRLAAKFDGDAIGQKVMKHDKVPMEIVGVVSNTDFPGSASYEADELFIPGNYSGYRVDTLVIKVKEDHAGFNQ ALMYAQLLKLDPRLDIMLLKSVDEHFANISRNQRFSAWLAGGISLVSLIMVLAGINGMISYMVRMRRYELGVRLAMGASQ KLLLRSQLFELAKPMATAALFGFSISYFVIGYSRTQVDWRFALYWPELISSLALLLVFAVIVSFIPIWRILKTDPIKALR NE
Sequences:
>Translated_802_residues MIALSHMLTAAQRQFGRAKQYYLTVTLSLALTLSLVFSVFSILDVAYLQPLPYGEADELYYVEGTLNYQQQIVVGTNTQN LLTLQQQQNIFSDLAIYFSWSEYKLLDSPERPDVPVMLASHNLFEVLQLKPVLGRFFNVDETMGNKQPSAILSYQAWQQH FAADPSIIGKSVQLNQRRFTIIGVTPDNLVLPQRSDVAQAIWLPLDMDEQLDPKSFGGYGSAIKALGRLQTGVTPELASE RLGEQMLAAAKLNTPELVKEYELSGRLQDFTAAMRGDSGKLIVMLVGGVSLLTLMALINLGNLQLARAVGRVQTVAISYA FGATRKQLFKDIFRHNGLLIGLASLFALLLTSFAFNMIGYLGEELLPRLDALSLNANMLLFAVLVTLVIAFVFSWIELKA IDESQLQSCLQASGKGTGKQLSKGVSHGLIGLQLLFAVLTLVASSQVLMASLNEALRQNHIISKDLWSMVVNYGAISDKE ARVNLQRAVSEHLRAQSGVVSVSRASDTRVPDTFNIGPIYNEMGDNIANGRVTVMDDNQLPLFGMQIQGRFFSREDLQLE YKPVIINQRLAAKFDGDAIGQKVMKHDKVPMEIVGVVSNTDFPGSASYEADELFIPGNYSGYRVDTLVIKVKEDHAGFNQ ALMYAQLLKLDPRLDIMLLKSVDEHFANISRNQRFSAWLAGGISLVSLIMVLAGINGMISYMVRMRRYELGVRLAMGASQ KLLLRSQLFELAKPMATAALFGFSISYFVIGYSRTQVDWRFALYWPELISSLALLLVFAVIVSFIPIWRILKTDPIKALR NE >Mature_802_residues MIALSHMLTAAQRQFGRAKQYYLTVTLSLALTLSLVFSVFSILDVAYLQPLPYGEADELYYVEGTLNYQQQIVVGTNTQN LLTLQQQQNIFSDLAIYFSWSEYKLLDSPERPDVPVMLASHNLFEVLQLKPVLGRFFNVDETMGNKQPSAILSYQAWQQH FAADPSIIGKSVQLNQRRFTIIGVTPDNLVLPQRSDVAQAIWLPLDMDEQLDPKSFGGYGSAIKALGRLQTGVTPELASE RLGEQMLAAAKLNTPELVKEYELSGRLQDFTAAMRGDSGKLIVMLVGGVSLLTLMALINLGNLQLARAVGRVQTVAISYA FGATRKQLFKDIFRHNGLLIGLASLFALLLTSFAFNMIGYLGEELLPRLDALSLNANMLLFAVLVTLVIAFVFSWIELKA IDESQLQSCLQASGKGTGKQLSKGVSHGLIGLQLLFAVLTLVASSQVLMASLNEALRQNHIISKDLWSMVVNYGAISDKE ARVNLQRAVSEHLRAQSGVVSVSRASDTRVPDTFNIGPIYNEMGDNIANGRVTVMDDNQLPLFGMQIQGRFFSREDLQLE YKPVIINQRLAAKFDGDAIGQKVMKHDKVPMEIVGVVSNTDFPGSASYEADELFIPGNYSGYRVDTLVIKVKEDHAGFNQ ALMYAQLLKLDPRLDIMLLKSVDEHFANISRNQRFSAWLAGGISLVSLIMVLAGINGMISYMVRMRRYELGVRLAMGASQ KLLLRSQLFELAKPMATAALFGFSISYFVIGYSRTQVDWRFALYWPELISSLALLLVFAVIVSFIPIWRILKTDPIKALR NE
Specific function: Part of the ABC transporter complex MacAB involved in macrolide export. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation [H]
COG id: COG0577
COG function: function code V; ABC-type antimicrobial peptide transport system, permease component
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR017911 - InterPro: IPR003593 - InterPro: IPR003838 [H]
Pfam domain/function: PF00005 ABC_tran; PF02687 FtsX [H]
EC number: NA
Molecular weight: Translated: 89046; Mature: 89046
Theoretical pI: Translated: 7.81; Mature: 7.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIALSHMLTAAQRQFGRAKQYYLTVTLSLALTLSLVFSVFSILDVAYLQPLPYGEADELY CCHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEE YVEGTLNYQQQIVVGTNTQNLLTLQQQQNIFSDLAIYFSWSEYKLLDSPERPDVPVMLAS EEEEECCCCEEEEEECCCCHHEEHHHHHHHHHHHHHEEECCCEEECCCCCCCCCCEEEEC HNLFEVLQLKPVLGRFFNVDETMGNKQPSAILSYQAWQQHFAADPSIIGKSVQLNQRRFT CCHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHCCCHHHCCCCEEECCCEEE IIGVTPDNLVLPQRSDVAQAIWLPLDMDEQLDPKSFGGYGSAIKALGRLQTGVTPELASE EEEECCCCEECCCCCCCHHHEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHH RLGEQMLAAAKLNTPELVKEYELSGRLQDFTAAMRGDSGKLIVMLVGGVSLLTLMALINL HHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHCC GNLQLARAVGRVQTVAISYAFGATRKQLFKDIFRHNGLLIGLASLFALLLTSFAFNMIGY CCHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHH LGEELLPRLDALSLNANMLLFAVLVTLVIAFVFSWIELKAIDESQLQSCLQASGKGTGKQ HHHHHHCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHCCCCCHHH LSKGVSHGLIGLQLLFAVLTLVASSQVLMASLNEALRQNHIISKDLWSMVVNYGAISDKE HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHH ARVNLQRAVSEHLRAQSGVVSVSRASDTRVPDTFNIGPIYNEMGDNIANGRVTVMDDNQL HHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEEECCCC PLFGMQIQGRFFSREDLQLEYKPVIINQRLAAKFDGDAIGQKVMKHDKVPMEIVGVVSNT CEEEEEECCCCCCCCCCCEEEEEEEECCHHHHCCCCHHHHHHHHHCCCCCCEEEEEEECC DFPGSASYEADELFIPGNYSGYRVDTLVIKVKEDHAGFNQALMYAQLLKLDPRLDIMLLK CCCCCCCCCCCEEEECCCCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHCCCCCCHHHHH SVDEHFANISRNQRFSAWLAGGISLVSLIMVLAGINGMISYMVRMRRYELGVRLAMGASQ HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCEEEECCCCH KLLLRSQLFELAKPMATAALFGFSISYFVIGYSRTQVDWRFALYWPELISSLALLLVFAV HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEEEEEEEEEEHHHHHHHHHHHHHHHH IVSFIPIWRILKTDPIKALRNE HHHHHHHHHHHCCCCHHHHCCC >Mature Secondary Structure MIALSHMLTAAQRQFGRAKQYYLTVTLSLALTLSLVFSVFSILDVAYLQPLPYGEADELY CCHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEE YVEGTLNYQQQIVVGTNTQNLLTLQQQQNIFSDLAIYFSWSEYKLLDSPERPDVPVMLAS EEEEECCCCEEEEEECCCCHHEEHHHHHHHHHHHHHEEECCCEEECCCCCCCCCCEEEEC HNLFEVLQLKPVLGRFFNVDETMGNKQPSAILSYQAWQQHFAADPSIIGKSVQLNQRRFT CCHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHCCCHHHCCCCEEECCCEEE IIGVTPDNLVLPQRSDVAQAIWLPLDMDEQLDPKSFGGYGSAIKALGRLQTGVTPELASE EEEECCCCEECCCCCCCHHHEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHH RLGEQMLAAAKLNTPELVKEYELSGRLQDFTAAMRGDSGKLIVMLVGGVSLLTLMALINL HHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHCC GNLQLARAVGRVQTVAISYAFGATRKQLFKDIFRHNGLLIGLASLFALLLTSFAFNMIGY CCHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHH LGEELLPRLDALSLNANMLLFAVLVTLVIAFVFSWIELKAIDESQLQSCLQASGKGTGKQ HHHHHHCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHCCCCCHHH LSKGVSHGLIGLQLLFAVLTLVASSQVLMASLNEALRQNHIISKDLWSMVVNYGAISDKE HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHH ARVNLQRAVSEHLRAQSGVVSVSRASDTRVPDTFNIGPIYNEMGDNIANGRVTVMDDNQL HHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEEECCCC PLFGMQIQGRFFSREDLQLEYKPVIINQRLAAKFDGDAIGQKVMKHDKVPMEIVGVVSNT CEEEEEECCCCCCCCCCCEEEEEEEECCHHHHCCCCHHHHHHHHHCCCCCCEEEEEEECC DFPGSASYEADELFIPGNYSGYRVDTLVIKVKEDHAGFNQALMYAQLLKLDPRLDIMLLK CCCCCCCCCCCEEEECCCCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHCCCCCCHHHHH SVDEHFANISRNQRFSAWLAGGISLVSLIMVLAGINGMISYMVRMRRYELGVRLAMGASQ HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCEEEECCCCH KLLLRSQLFELAKPMATAALFGFSISYFVIGYSRTQVDWRFALYWPELISSLALLLVFAV HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEEEEEEEEEEHHHHHHHHHHHHHHHH IVSFIPIWRILKTDPIKALRNE HHHHHHHHHHHCCCCHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 12534463 [H]