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The map label for this gene is lpsA [H]

Identifier: 167626107

GI number: 167626107

Start: 5105331

End: 5106074

Strand: Reverse

Name: lpsA [H]

Synonym: Shal_4202

Alternate gene names: 167626107

Gene position: 5106074-5105331 (Counterclockwise)

Preceding gene: 167626112

Following gene: 167626106

Centisome position: 97.69

GC content: 40.32

Gene sequence:

>744_bases
ATGAAGTGTTTCGTTATTAGCTTGCTAACAGAAAAGAAAAGGCGAGCTCATATCAATCAAGAGTTTTCTTCACAAGCTAT
CCCGTTTGAGTTTTTTGATGCAACAACCCCGGATCTAAATGAAGCAGAAACAACTCGCCTGCAGATAGCGACTCAAGATA
CAACCCTAAGTAAAGGGGAGCTATCTTGCCTGTTAAGTCATGTTGCCTTACTACAGCAAATAGTTGATGAATCGATCCCC
TACACCGCGATCTTCGAAGATGACATTCATCTAGGTAAGGATGCAGGCCGTTATTTATGTTCAGAAAGCTGGATCCCTAA
AACAGCGGAGTTGATTAAAGTTGAGATGTTTAATCATATCGCTAAAGGAACATTTTTAGGTAATCATAAGTTGGCCCTAG
GTGCTGAACTCTTTAAGTTACGAGGCAAGCATCTAGGTACCGCTGGCTATATCATTAGTTGCCGTATGGCTGGGCTATTA
TTGTCTGAAATCCGTCAATATCAGCCAATAGAGGCGATAGATAAGATTATGTTTGAAGAGATGATTACTTCAAAAAAAGT
GGTCGCATACCAGCTCCAGCCAGCAATTTGTGCGCAAGATGACATCATCAACAGAAAAAACAGCTTACTCCATAGTAGTT
TGAATGATGAACGAATACTGCCAGCTAAGAAAAAGTTGAGTTTAGGGCTAAAAGTTAAGCGTGAAGTGGACCGTATGCTT
AGTCGTCGAATTCAATTTAAATAG

Upstream 100 bases:

>100_bases
TTATCTTAACCCGTCTCGACGGTATTTTATGATTTTTAATACGCTGTCATTCGATTATAATCATTTGCAGATTATTCTAT
TGAATTATGGTTGCTAGATT

Downstream 100 bases:

>100_bases
CCCCATAAATTAATATCTATCTATCTGACGTTATGCGTCGTGTCCGTTATAATTAGCTTTTACCACTTGTGATATCAACC
CATGAATCGTACTAAGAAGA

Product: glycosyl transferase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 247; Mature: 247

Protein sequence:

>247_residues
MKCFVISLLTEKKRRAHINQEFSSQAIPFEFFDATTPDLNEAETTRLQIATQDTTLSKGELSCLLSHVALLQQIVDESIP
YTAIFEDDIHLGKDAGRYLCSESWIPKTAELIKVEMFNHIAKGTFLGNHKLALGAELFKLRGKHLGTAGYIISCRMAGLL
LSEIRQYQPIEAIDKIMFEEMITSKKVVAYQLQPAICAQDDIINRKNSLLHSSLNDERILPAKKKLSLGLKVKREVDRML
SRRIQFK

Sequences:

>Translated_247_residues
MKCFVISLLTEKKRRAHINQEFSSQAIPFEFFDATTPDLNEAETTRLQIATQDTTLSKGELSCLLSHVALLQQIVDESIP
YTAIFEDDIHLGKDAGRYLCSESWIPKTAELIKVEMFNHIAKGTFLGNHKLALGAELFKLRGKHLGTAGYIISCRMAGLL
LSEIRQYQPIEAIDKIMFEEMITSKKVVAYQLQPAICAQDDIINRKNSLLHSSLNDERILPAKKKLSLGLKVKREVDRML
SRRIQFK
>Mature_247_residues
MKCFVISLLTEKKRRAHINQEFSSQAIPFEFFDATTPDLNEAETTRLQIATQDTTLSKGELSCLLSHVALLQQIVDESIP
YTAIFEDDIHLGKDAGRYLCSESWIPKTAELIKVEMFNHIAKGTFLGNHKLALGAELFKLRGKHLGTAGYIISCRMAGLL
LSEIRQYQPIEAIDKIMFEEMITSKKVVAYQLQPAICAQDDIINRKNSLLHSSLNDERILPAKKKLSLGLKVKREVDRML
SRRIQFK

Specific function: Involved in the biosynthesis of a moiety on the core of the lipopolysaccharide molecule [H]

COG id: COG3306

COG function: function code M; Glycosyltransferase involved in LPS biosynthesis

Gene ontology:

Cell location: Cytoplasm. Note=Assembles at the inner surface of the cytoplasmic membrane (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 25 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002654 [H]

Pfam domain/function: PF01755 Glyco_transf_25 [H]

EC number: NA

Molecular weight: Translated: 28022; Mature: 28022

Theoretical pI: Translated: 8.71; Mature: 8.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKCFVISLLTEKKRRAHINQEFSSQAIPFEFFDATTPDLNEAETTRLQIATQDTTLSKGE
CCEEEEHHHHHHHHHHHHCHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCHHH
LSCLLSHVALLQQIVDESIPYTAIFEDDIHLGKDAGRYLCSESWIPKTAELIKVEMFNHI
HHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHH
AKGTFLGNHKLALGAELFKLRGKHLGTAGYIISCRMAGLLLSEIRQYQPIEAIDKIMFEE
HHCEEECCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
MITSKKVVAYQLQPAICAQDDIINRKNSLLHSSLNDERILPAKKKLSLGLKVKREVDRML
HHHCCCEEEEECCCCHHCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCHHHHHHHHHH
SRRIQFK
HHHCCCC
>Mature Secondary Structure
MKCFVISLLTEKKRRAHINQEFSSQAIPFEFFDATTPDLNEAETTRLQIATQDTTLSKGE
CCEEEEHHHHHHHHHHHHCHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCHHH
LSCLLSHVALLQQIVDESIPYTAIFEDDIHLGKDAGRYLCSESWIPKTAELIKVEMFNHI
HHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHH
AKGTFLGNHKLALGAELFKLRGKHLGTAGYIISCRMAGLLLSEIRQYQPIEAIDKIMFEE
HHCEEECCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
MITSKKVVAYQLQPAICAQDDIINRKNSLLHSSLNDERILPAKKKLSLGLKVKREVDRML
HHHCCCEEEEECCCCHHCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCHHHHHHHHHH
SRRIQFK
HHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7781993; 1885539 [H]