Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
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Accession | NC_010334 |
Length | 5,226,917 |
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The map label for this gene is 167623668
Identifier: 167623668
GI number: 167623668
Start: 2083657
End: 2084331
Strand: Direct
Name: 167623668
Synonym: Shal_1737
Alternate gene names: NA
Gene position: 2083657-2084331 (Clockwise)
Preceding gene: 167623667
Following gene: 167623672
Centisome position: 39.86
GC content: 46.67
Gene sequence:
>675_bases GTGGGTAGCATTTTAAAGCAAGGCGATAATTTTTATGATGATGCAAGGCGTGATAAACGCCTTGGCAGACGGTTTCATCA GTATATTCCGTGGTTGTTATTGGCTGCAGGTGTCGTTTTAATCGTTCAAGGTGGATATATGCAAGCTAAAGCGAATTTTG CTCAATTTCTTATTCAACAGGCTTGGCAGAAAACATTGTTGGATGAAAAGCCGCATAAGCCTTGGTCGTGGGCTGATACG TATCCCGTTGCCAAGCTAGATTTTTTGCCGATGAAAACTCACTTGCAAGAACTTCCCGCTGAGTCGCGCGATAGCAATGA CAGTCTATACGTACTGGCTGGCGCATCGGGCCGTAATTTAGCTTTTGGCCCGGCACAAATGTTAACGTCGGCAAGTGTTA ATGGTCAGGGCAATACGGTTATTGCAGGCCATAGAGATACCCACTTTGCGAGACTTGATGGTGTTCAAGTCGGCCAGTTA ATCCAGTTACAAAGCGCATCGGGAAAGAGTCGTATCTATCGTGTGGCAACGGCGCTAGTGACTCATGAGTCCGATATGAG TGTGATTGAGAATAATGGTCACAGACAACTAACCTTGGTGACCTGTTATCCATTTGGGGCGGAGTTTGCTGGTGGGCCAC TGCGATTTGTGGTTAAGGCGGAGCCTGTTAATTAG
Upstream 100 bases:
>100_bases ACGAATAGTTTTGTGTTCATGATTTTTGGTACGACTCTGTTGCTATTAGCGGCGTTATATCGGCTGTCTTTTAGGCGTAC TGACATAAGTGAACCTAGCT
Downstream 100 bases:
>100_bases ACTGGTTAAGCTTATTAACTATTAACGGTGATCAGAGCTAGCGATGCTGGCGCTAAGGCAATGGTGCCCATAGCGCTAAG CCGCTCTGATTGAATGCCAT
Product: peptidase C60 sortase A and B
Products: NA
Alternate protein names: Peptidase; LPXTG-Site Transpeptidase Family Protein; Sortase; Sortase-Like Protein; Sortase Family Protein Peptidase C; Transpeptidase Protein; Sortase Family; Sortase-Like
Number of amino acids: Translated: 224; Mature: 223
Protein sequence:
>224_residues MGSILKQGDNFYDDARRDKRLGRRFHQYIPWLLLAAGVVLIVQGGYMQAKANFAQFLIQQAWQKTLLDEKPHKPWSWADT YPVAKLDFLPMKTHLQELPAESRDSNDSLYVLAGASGRNLAFGPAQMLTSASVNGQGNTVIAGHRDTHFARLDGVQVGQL IQLQSASGKSRIYRVATALVTHESDMSVIENNGHRQLTLVTCYPFGAEFAGGPLRFVVKAEPVN
Sequences:
>Translated_224_residues MGSILKQGDNFYDDARRDKRLGRRFHQYIPWLLLAAGVVLIVQGGYMQAKANFAQFLIQQAWQKTLLDEKPHKPWSWADT YPVAKLDFLPMKTHLQELPAESRDSNDSLYVLAGASGRNLAFGPAQMLTSASVNGQGNTVIAGHRDTHFARLDGVQVGQL IQLQSASGKSRIYRVATALVTHESDMSVIENNGHRQLTLVTCYPFGAEFAGGPLRFVVKAEPVN >Mature_223_residues GSILKQGDNFYDDARRDKRLGRRFHQYIPWLLLAAGVVLIVQGGYMQAKANFAQFLIQQAWQKTLLDEKPHKPWSWADTY PVAKLDFLPMKTHLQELPAESRDSNDSLYVLAGASGRNLAFGPAQMLTSASVNGQGNTVIAGHRDTHFARLDGVQVGQLI QLQSASGKSRIYRVATALVTHESDMSVIENNGHRQLTLVTCYPFGAEFAGGPLRFVVKAEPVN
Specific function: Unknown
COG id: COG3764
COG function: function code M; Sortase (surface protein transpeptidase)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24811; Mature: 24679
Theoretical pI: Translated: 9.57; Mature: 9.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGSILKQGDNFYDDARRDKRLGRRFHQYIPWLLLAAGVVLIVQGGYMQAKANFAQFLIQQ CCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEHHHHHHHHHHHH AWQKTLLDEKPHKPWSWADTYPVAKLDFLPMKTHLQELPAESRDSNDSLYVLAGASGRNL HHHHHHHCCCCCCCCCCCCCCCCCEEECCCHHHHHHHCCCCCCCCCCCEEEEECCCCCCC AFGPAQMLTSASVNGQGNTVIAGHRDTHFARLDGVQVGQLIQLQSASGKSRIYRVATALV CCCHHHHHHHCCCCCCCCEEEECCCCCCEEEECCCCCCCEEEEECCCCHHHHHHHHHHHH THESDMSVIENNGHRQLTLVTCYPFGAEFAGGPLRFVVKAEPVN HCCCCCHHHCCCCCEEEEEEEEECCCCCCCCCCEEEEEEECCCC >Mature Secondary Structure GSILKQGDNFYDDARRDKRLGRRFHQYIPWLLLAAGVVLIVQGGYMQAKANFAQFLIQQ CCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEHHHHHHHHHHHH AWQKTLLDEKPHKPWSWADTYPVAKLDFLPMKTHLQELPAESRDSNDSLYVLAGASGRNL HHHHHHHCCCCCCCCCCCCCCCCCEEECCCHHHHHHHCCCCCCCCCCCEEEEECCCCCCC AFGPAQMLTSASVNGQGNTVIAGHRDTHFARLDGVQVGQLIQLQSASGKSRIYRVATALV CCCHHHHHHHCCCCCCCCEEEECCCCCCEEEECCCCCCCEEEEECCCCHHHHHHHHHHHH THESDMSVIENNGHRQLTLVTCYPFGAEFAGGPLRFVVKAEPVN HCCCCCHHHCCCCCEEEEEEEEECCCCCCCCCCEEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA